Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1518 ATGAAGGATGAGAGTAGTCCTGTTAGCAATAATACAACAAATTTGCAAAACAACAACACAGGAAGCCCTGAAAGCCCTTGCTTAAAATCATCATCATCATGCACAACCCCAACAACAACAAACAAGGAACAAGATCGATTCCTTCCCATTGCAAATGTTGGGAGGATCATGAAGAAAGTGATGCCTGCAAATGGAAAAATCTCAAAGGACGCAAAAGAAACAGTTCAGGAATGTGTCTCCGAGTTCATCAGCTTCGTCACCGGGGAGGCCTCCGATAAGTGTCAGAGAGAAAAGAGAAAGACCATCAATGGCGATGACATTATCTGGGCCATCACAACGCTTGGCTTTGAGGACTACGTTGATCCCTTGAAATCTTACCTTCAGAAATATAGAGAGATAGAAGGAGAGAAGCTTAATGTTCCCAAACAACAACGTTCTTCTTCTTCTTCTGATCATCATCATCATCAACAAAGCCTACAACATAACAATAATAATAACCTGCCAGCTTTAAATAATAGTGTATATTCTTCAACCAGTCTCATTTCTCATCATCATCCTCCTCCTCTTCATCCTCCTCCTCCTTATGTGACAACGGATCAGACATTTTCGTTACCTTTCTCATTAAATTCACTTCAGAAACAGTTACAGCCTCAAGACAATATGGATTCAGTGGGGCATTGGTAA 684 0.4064 MKDESSPVSNNTTNLQNNNTGSPESPCLKSSSSCTTPTTTNKEQDRFLPIANVGRIMKKVMPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYREIEGEKLNVPKQQRSSSSSDHHHHQQSLQHNNNNNLPALNNSVYSSTSLISHHHPPPLHPPPPYVTTDQTFSLPFSLNSLQKQLQPQDNMDSVGHW 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1518 227 Gene3D Histone, subunit A 35 171 IPR009072 GO:0046982
Lele22g1518 227 MobiDBLite consensus disorder prediction 159 183 - -
Lele22g1518 227 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Lele22g1518 227 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Lele22g1518 227 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Lele22g1518 227 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Lele22g1518 227 ProSitePatterns NF-YB/HAP3 subunit signature. 78 94 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele22g1518 227 MobiDBLite consensus disorder prediction 137 201 - -
Lele22g1518 227 SUPERFAMILY Histone-fold 44 168 IPR009072 GO:0046982
Lele22g1518 227 FunFam Nuclear transcription factor Y subunit B-3 36 161 - -
Lele22g1518 227 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 172 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele22g1518 227 MobiDBLite consensus disorder prediction 1 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1518 Lele-ChrLele22 20873064 20873747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1518 1 227 CCAAT-HAP3 Transcription Factor Family AT2G13570 58.475 6.65e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele22g1518 CBFD_NFYB_HMF 3.4e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1518 22 20873064 20873747 Lele24g1482 24 20667368 20669964 hybridization