Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1513 ATGAAGAGGAGGGAAGATAGTAAGGTAAGGTCACTGTTGTGTGACATGGAAATCCGACTCTTCATTTGTGAGGGTGCAGAAAGAAAACAAGAAGTTGCGCAGCATGAGTTCCGAAGTATTATCATGGGTGGGGTCCATATTGACCCAAAGCGTGGGGTAACTCGAAAGTGTCCCGACCACAAGTTCCCGTGGCGGGTGTGGAGTATGCACACCAATCTCCATCCCATGCGGCTCCATACTGTCCCTCGCTCTCCTTGTTCCTCTGGAAGTGTGTTCTTTCTGGTGGGTCATCAACTAAGCAAGTGGAAGACTAATAATGGATGTAGTTTGGATACTAGAGTTTTTATAAGTAGGTTGTTTCATAAGAAGAGATGCAACTCAAAATGCATTGGAGCACCCATATCCTGTTCAGCGGCTATTAGGAGTGATTCCTTTATACCTTCTAAAGAGCTACTAAGTGATGCGCGATTGATATATTCCATTGCTCCAGCCATGGGCCACAACCAGGAATCTCATCCTGAATCACATTTAAGGGTTCCTGCAATTGTGAATGCTCTTGAAGAAATGAAGCTCACTTCAAAGTTCCGGGGTTCTGAGATCATTGAACTTCAAAACTTTGAGCCTGCCTCAGTAGAGGACGTTGCTAGTGTGCATGCAAGAGCCTATGTATCTGGCCTTGAGAAGGCTATGGATCAAGCTTCAGAGAAAGGACTTATTTTCATTGATGGCTCCGGACCAACATATGCTACAGCCACTACATTCCAGGAGTCATTAGTAGCTGCTGGAGCCGGATTAGCCTTAATTGACTCAGTGGTCGCAGCTTCAAGGAACAGCCGAGATCCACCCACTGGTTTTGCTTTGATAAGACCGCCAGGACATCATGCTGTTCCACAAGGGCCTATGGGCTTCTGTGTTTTTGGAAATGTGGCCATTGCTGCTCGTTATGCTCAACGTGTACATGGTCTAAAGCGCGTGTTTATAATTGATTTTGATGTCCACCATGGGAATGGAACAAATGATGCTTTCTATGATGATCCACATATATTTTTCCTCTCAACTCACCAAGCTGGAAGCTACCCTGGCACTGGTAAGTTTGATGAGGTGGGAGCTGGAGATGGAGAAGGAACCTCATTAAACCTACCTCTACCAGGAGGATCAGGTGATACTACTATGAGAACTGTGTTTGATGAAGTCATTGTGCCTTCTGCTCAAAGGTTTAAGCCAGACATTATTCTTGTTTCTGCTGGGTATGATGCTCATGTGTTGGATCCGCTAGCCAATTTACAGTACACAACAGGAACATACTACATGCTTGCGTCCAATATAAAACAATTAGCAAAACAATTATGTGGAGGCCGATGCGTGTTCTTCTTGGAGGGAGGATATAATCTCAAATCTCTTTCATATTCAGTGGCAGACTCATTCCGTGCTCTTCTCGGCGATCGGAGTTTGGCATCTGAGTTTGATGATCCAAACATTCTCTATGAAGAGCCATCAACAAGGGTTAAGCAAGCAATTGATAGGATCAAGGCCATACATTACCTGTGA 1548 0.4483 MKRREDSKVRSLLCDMEIRLFICEGAERKQEVAQHEFRSIIMGGVHIDPKRGVTRKCPDHKFPWRVWSMHTNLHPMRLHTVPRSPCSSGSVFFLVGHQLSKWKTNNGCSLDTRVFISRLFHKKRCNSKCIGAPISCSAAIRSDSFIPSKELLSDARLIYSIAPAMGHNQESHPESHLRVPAIVNALEEMKLTSKFRGSEIIELQNFEPASVEDVASVHARAYVSGLEKAMDQASEKGLIFIDGSGPTYATATTFQESLVAAGAGLALIDSVVAASRNSRDPPTGFALIRPPGHHAVPQGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPHIFFLSTHQAGSYPGTGKFDEVGAGDGEGTSLNLPLPGGSGDTTMRTVFDEVIVPSAQRFKPDIILVSAGYDAHVLDPLANLQYTTGTYYMLASNIKQLAKQLCGGRCVFFLEGGYNLKSLSYSVADSFRALLGDRSLASEFDDPNILYEEPSTRVKQAIDRIKAIHYL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1513 515 PRINTS Histone deacetylase superfamily signature 408 418 IPR000286 -
Lele22g1513 515 PRINTS Histone deacetylase superfamily signature 290 313 IPR000286 -
Lele22g1513 515 PRINTS Histone deacetylase superfamily signature 324 339 IPR000286 -
Lele22g1513 515 CDD HDAC_classII 172 479 - -
Lele22g1513 515 Pfam Histone deacetylase domain 172 477 IPR023801 -
Lele22g1513 515 PANTHER HISTONE DEACETYLASE 2-RELATED 154 481 - -
Lele22g1513 515 SUPERFAMILY Arginase/deacetylase 169 482 IPR023696 -
Lele22g1513 515 Gene3D Histone deacetylase domain 148 513 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1513 Lele-ChrLele22 20818037 20826136 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1513 22 20818037 20826136 Lele23g0486 23 3559785 3570782 hybridization
Lele22g1513 22 20818037 20826136 Lele24g1475 24 20595496 20603588 hybridization