Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1492 ATGAATACCAACCAGAATAATATTATTCATCCCTCTTTCCCCACTAGTGTTAACAATAATAATAATCATCACCCCACTTGGAATATGGCTTCTGCTTGGCAGATTTCTTCGACTTCATCTTCTTCATCTTCAGGTTTTCTCGTCAGTGACATGTTTGCCATCAACTTGGAACGAGAAGGAGAAGGAGAAGGGGAAGAAGAAGAAGAAGAAGGACAAGGAGAAGAGCTTGGAGCTATGAAGGAGATGATGTACAGGATCGCGGCTCTGCAACCCATCGACATCGACCTTTCCACCATACAGAAACCTAAGCGGCGGAACGTCCGGATCAGCGACGACCCCCAGAGCGTGGCCGCCCGCCACCGCCGTGAGAGGATCAGCGAGAAAATCCGCATACTCCAAAGACTCGTCCCCGGCGGAACCAAGCTCGACACCGCCTCCATGCTGGACGAAGCCATTCGATACGTTAAGTTCTTGAAGAGACAAATCAGGTTGCTCCAATCTCCACAGCACCGCAACAATATTATTATGGGTACGATCACCACCGGTAATAATGCCACTCTCGCCGATTGGCCTTATACACCAAACACAACACTCCCCACCGCCGCCTCCACCGGACTAGGGTTCAACGCCGAAGAAAGCTCCTCGGGGTTTAACCATGAGGTAATTAGTGAATAG 675 0.4978 MNTNQNNIIHPSFPTSVNNNNNHHPTWNMASAWQISSTSSSSSSGFLVSDMFAINLEREGEGEGEEEEEEGQGEELGAMKEMMYRIAALQPIDIDLSTIQKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKLDTASMLDEAIRYVKFLKRQIRLLQSPQHRNNIIMGTITTGNNATLADWPYTPNTTLPTAASTGLGFNAEESSSGFNHEVISE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1492 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
Lele22g1492 224 Gene3D - 112 176 IPR036638 GO:0046983
Lele22g1492 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 173 IPR036638 GO:0046983
Lele22g1492 224 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 15 201 IPR045843 GO:0003700|GO:0006355
Lele22g1492 224 SMART finulus 115 164 IPR011598 GO:0046983
Lele22g1492 224 Pfam Helix-loop-helix DNA-binding domain 119 158 IPR011598 GO:0046983
Lele22g1492 224 FunFam BHLH transcription factor 112 175 - -
Lele22g1492 224 CDD bHLH_AtIND_like 110 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1492 Lele-ChrLele22 20667554 20668228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1492 78 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 77.528 2.52e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele22g1492 HLH 2.8e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1492 22 20667554 20668228 Lele23g0508 23 3725414 3726771 hybridization
Lele22g1492 22 20667554 20668228 Lele24g1444 24 20381305 20381775 hybridization