Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1491 ATGTTTGGTGTGCGTTGTTCTACCAGAATTGTTTCTGACGTTGTTTACCAGCTTCGTCAAACTTTATCAGTGGCCCAATGGAGCATTGTGCTCCCAAATCCACATTCCTTTGCTTTCATTTGCCAGCTTCGTGGTGTACGAGCCCAATATATAAACATTGGAGGTGGTGTTGGAGGGGAGATCCCTGACAACAAGCGCCTTCAGTATGCCCTGCAACACATACATGCAATTGGCCGTTCCAAAGCTCACCACATTGTCTGTGAGCTTGGGGTTGAGAACAAATATGACAAGGACCTAAGTAAGAGAGAATTATATTCCCTTCGAGAATTACTTTCCAAGTACCTGCTCGGAAATGACTTGAAAAGATGTGTTGAGAAAGATATAGAAAGGTTGGTCAGTATTCAGTGTTACAGGGGCTTCAGACATGTGGATGGGTTACCCTGCAGAGGACAACGCACACATACAAATGCTCGTACCAGGAAGAGCAGGCCGGGTTTTGCTGCATCAAGATCTGCTCACTAG 522 0.4559 MFGVRCSTRIVSDVVYQLRQTLSVAQWSIVLPNPHSFAFICQLRGVRAQYINIGGGVGGEIPDNKRLQYALQHIHAIGRSKAHHIVCELGVENKYDKDLSKRELYSLRELLSKYLLGNDLKRCVEKDIERLVSIQCYRGFRHVDGLPCRGQRTHTNARTRKSRPGFAASRSAH 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1491 173 MobiDBLite consensus disorder prediction 149 173 - -
Lele22g1491 173 ProSitePatterns Ribosomal protein S13 signature. 138 151 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele22g1491 173 Gene3D 30s ribosomal protein s13, domain 2 122 161 IPR027437 -
Lele22g1491 173 SUPERFAMILY S13-like H2TH domain 58 162 IPR010979 GO:0003676
Lele22g1491 173 FunFam Ribosomal protein S13 122 161 - -
Lele22g1491 173 Pfam Ribosomal protein S13/S18 58 159 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele22g1491 173 Gene3D - 57 121 - -
Lele22g1491 173 ProSiteProfiles Ribosomal protein S13 family profile. 57 162 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele22g1491 173 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 57 161 - -
Lele22g1491 173 Hamap 30S ribosomal protein S13 [rpsM]. 50 169 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1491 Lele-ChrLele22 20659914 20661001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1491 61 162 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.571 6.53e-06 42.4