Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1486 ATGGCTCCGGCCAACTCCTCGGCGGCGGCTCAGAGGCTCATGGGCTTCAGCCGCCGTACGCAAGCTCCGAGGCACTCGTCGCCGCTGGCCTCACCTCCGGTCAAGAAGTATAAGTCATTGACCGAGATAATGGCCAAGGCACGATATGCTGTTGTTGAGAGGGATGATTACAGCGACGTGTTGTGTGACCAATGTGGCTCTGGTGAACGCCCGGACGAGCTGCTTCTGTGTGATAAATGCGATAAAGGCTTCCATATGAAATGCGTGAGGCCCATTGTTGTTAGAGTTCCTATTGGATCATGGCTTTGCCCTAAGTGTTCGGGGGAGAAGAGAGTAAGAAGTTTTTCTCAGAAGAAGATAATTGATTTTTTCCGGATTCAGAAATGTGCTGATCTTAAAAACAAGTGCTCTTCTCCCCAAGATGCCAAGAGGCGTAAAAGGCGAACATCCCTGATATTGCACAAGAAACGAAGAAGACTATTGCCATTTATTCCTACAGAAAATCCTTCCCAGAGACTGAAACAGATGGGTTCTCTTGCTACTGCTTTAACAGCATTGCAAATGGAATTCAGTGATGATCTCACATACTCACCTGAAATGGCTCCTAGGTCTGCTAACCATGCCGATTTTGAAGATGGTGGCATGCAGATGTATCCATCACTGTTAGCTAGTCTGATTAAAGATGCTTCTCCTTCTCAGGTTCTTTCCAGGGAAGATATTGAGACCTTGGAACACTGCAGAGCAATGTGTAGAAGAGGGGAATGCCCTCCCCTTATGGTTGTTTATGATTCATGTGAAGGGTATACAGTAGAGGCTGATGGCCCAATCAAGGATATGATATTCATTGCCGAATACACAGGCGATGTGGATTACATAAAAAACCGGGAACATGATGATTGTGACAGTCTAATGACCCTTCTGCTAGCAACTGATCCTACTAAAAGTCTTGTAATCTGCCCCGATAAACGCGGAAACATTGCTCGCTTTATAAGTGGCATCAACAATCATACACAGGAAGGTAGAAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCAAAAGGGGAGAGGCTTTATTATGATTATAACGGTTATGAGCGTGAATACCCTACTCATCATTTTGTCTGA 1173 0.4501 MAPANSSAAAQRLMGFSRRTQAPRHSSPLASPPVKKYKSLTEIMAKARYAVVERDDYSDVLCDQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVRSFSQKKIIDFFRIQKCADLKNKCSSPQDAKRRKRRTSLILHKKRRRLLPFIPTENPSQRLKQMGSLATALTALQMEFSDDLTYSPEMAPRSANHADFEDGGMQMYPSLLASLIKDASPSQVLSREDIETLEHCRAMCRRGECPPLMVVYDSCEGYTVEADGPIKDMIFIAEYTGDVDYIKNREHDDCDSLMTLLLATDPTKSLVICPDKRGNIARFISGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGYEREYPTHHFV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1486 390 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Lele22g1486 390 CDD SET_ATXR5_6-like 253 390 - -
Lele22g1486 390 ProSiteProfiles SET domain profile. 256 378 IPR001214 GO:0005515
Lele22g1486 390 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 135 388 - -
Lele22g1486 390 Pfam SET domain 302 378 IPR001214 GO:0005515
Lele22g1486 390 Gene3D SET domain 145 390 IPR046341 -
Lele22g1486 390 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Lele22g1486 390 SUPERFAMILY SET domain 245 378 IPR046341 -
Lele22g1486 390 Pfam PHD-finger 62 107 IPR019787 -
Lele22g1486 390 SUPERFAMILY FYVE/PHD zinc finger 28 107 IPR011011 -
Lele22g1486 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 121 IPR013083 -
Lele22g1486 390 SMART PHD_3 61 107 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1486 Lele-ChrLele22 20626558 20630542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1486 59 115 C2H2 Transcription Factor Family AT3G01460 36.207 7.14e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele22g1486 SET 9.7e-06 No_clan