Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1483 ATGAAATCTCCGGTGAGTCTATGCACCGGAGTTACCTACGACCGTTCTAGCATCCAACGGTGGCTCAGCAACGGCAACAACACCTGCCCGGCCACCATGCAGGTTTTGCAAACCAAAGAATTTGTTCCTAACCGTACTCTACAGAGGCTTATCCAGATCTGGTCTGACTCGGTTCGAAACCGAGTCGGATCGGCCGATTCTCCGGCCCCCAGAACAGTCCCCTCACCGGATCAGGTCGTCGACTCTATGAAATACTTGGACGGCCACGGCGAGAACTGTCTCGATTCGTTAACGAGAATTGTATATTTCGCCGAAGAATCTGAAGAGAATCGGGAGTTCCTCGCGAACGCCGGCTCGAAAATCGGATCGGCGAGGATTCTGAAGTTCATCGCGGTGGATACCGAGTCCAAAGCCATTATAGCCGAAAAGGAAGGTTTAATGTCCGAATTGCTCAAATCAGTGGATCCCGACGAGGACCCGGCGCTAATCGATAACGCCTTGTCATGTTTGATTGCAATATCGACGCCGAAACGGAACAAGTTGAAATTGGTCCATCTCGGAGCTATCAAGACACTTTCGCAATTACTTTCCCGCTCAAATTCGAACACTTCCGTGACGGAAAAGGTTCTGAAACTTCTCGAAACGGTGTCGTCAACAAAAGAAGAAAGTGATGAAGGTAACGATCATGGCGACGGAGCACGCGGTGATGATACTGTGGACTGTGTGTTATCTGTTTCGCGATCAGAAGGCGCAGGAAGTGGTGGCAATGGCCAACGGTTTCACCAAATTTCTGCTTCTGATGCAGAGCAATTGTTCGCCGGCGGCTCGTCAAATGTCTGCCGATTTGCTAAAGGTTTTTCGCGTTAA 867 0.5017 MKSPVSLCTGVTYDRSSIQRWLSNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSVRNRVGSADSPAPRTVPSPDQVVDSMKYLDGHGENCLDSLTRIVYFAEESEENREFLANAGSKIGSARILKFIAVDTESKAIIAEKEGLMSELLKSVDPDEDPALIDNALSCLIAISTPKRNKLKLVHLGAIKTLSQLLSRSNSNTSVTEKVLKLLETVSSTKEESDEGNDHGDGARGDDTVDCVLSVSRSEGAGSGGNGQRFHQISASDAEQLFAGGSSNVCRFAKGFSR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1483 288 SUPERFAMILY ARM repeat 92 217 IPR016024 -
Lele22g1483 288 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 187 222 IPR000225 GO:0005515
Lele22g1483 288 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Lele22g1483 288 MobiDBLite consensus disorder prediction 216 238 - -
Lele22g1483 288 CDD RING-Ubox_PUB 1 34 IPR045210 -
Lele22g1483 288 SUPERFAMILY RING/U-box 1 56 - -
Lele22g1483 288 MobiDBLite consensus disorder prediction 216 236 - -
Lele22g1483 288 Gene3D - 79 248 IPR011989 -
Lele22g1483 288 Pfam U-box domain 1 57 IPR003613 GO:0004842|GO:0016567
Lele22g1483 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 64 IPR013083 -
Lele22g1483 288 PANTHER WDSAM1 PROTEIN 118 232 IPR045185 GO:0061630
Lele22g1483 288 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1483 Lele-ChrLele22 20590016 20591127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1483 1 235 U-box Gene Family AT3G18710 39.935 5.46e-54 179
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1483 22 20590016 20591127 Lele23g0519 23 3811872 3813107 hybridization
Lele22g1483 22 20590016 20591127 Lele24g1435 24 20298903 20300072 hybridization