Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1477 ATGTCTGCTTCTGCTAATTCTCAGCAACTCTTCCATGGCCTTCAATTCCAGTACTCTAGAAGGTTACTGTTCCTTAACTCCCACCTCAACTCAACCAACAACACCACCTCGACAGAATCCTCCATCCTCGGAGATGCTAACTTCAATGCCAATGTTATCATGGTACTGGGTGTCCTCTTGTGTGCTCTCATCTGTTCACTCGGTTTAAACTCCATCATCAGATGTATCTTAAAGTGTTCCATCTTCGTCGTCCCCAATAATAATAACGACTCATCAAACCCTACTGTTCCGGCACGAGTGGCCAACACCGGAGTGAAGAAGAAGGCATTGAAGACTTTCCCTACTGTGACTTACTCTTCTGAGTCGTTGAAGCTCCCAGGTTTGGACACAGAGTGCGCGATATGTCTCTCGGAGTTTGACAATGGCGATCGCCTTCGGATGCTTCCAAAGTGCAACCATGGCTTCCATGTTCGTTGCATTGACAAGTGGCTGAGCTCGCATTCGTCTTGCCCTAAGTGCAGACACTGCCTTATTCAGACACGTCATCAGAAGATCGTAAAGTCATCTTCTTCTGTTGCTCCTGCTGAAACTATAGTGAGGATTGCACCCTTAGAAGCAGAGGCTATGGTGCGTAACTATAGCTAG 645 0.4698 MSASANSQQLFHGLQFQYSRRLLFLNSHLNSTNNTTSTESSILGDANFNANVIMVLGVLLCALICSLGLNSIIRCILKCSIFVVPNNNNDSSNPTVPARVANTGVKKKALKTFPTVTYSSESLKLPGLDTECAICLSEFDNGDRLRMLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIQTRHQKIVKSSSSVAPAETIVRIAPLEAEAMVRNYS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1477 214 PANTHER RING-H2 FINGER PROTEIN ATL78 15 209 IPR044602 GO:0016567|GO:0016740
Lele22g1477 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 178 IPR013083 -
Lele22g1477 214 SUPERFAMILY RING/U-box 131 180 - -
Lele22g1477 214 CDD RING-H2_EL5_like 131 174 - -
Lele22g1477 214 FunFam RING-H2 finger protein ATL73 92 179 - -
Lele22g1477 214 Pfam Ring finger domain 131 174 IPR001841 -
Lele22g1477 214 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Lele22g1477 214 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1477 Lele-ChrLele22 20537739 20538383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1477 21 184 C3H Transcription Factor Family AT1G76410 47.561 1.35e-43 142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1477 22 20537739 20538383 Lele23g0525 23 3875047 3877879 hybridization
Lele22g1477 22 20537739 20538383 Lele24g1428 24 20248553 20249197 hybridization