Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1476 ATGGCTGCTTCTGCTAATTCTGAACTACTCTTTCAGTACTCTAGAAGGTTACTGTTCCTTCATTCCCACCTCAACTCAACCAGCTCGTCATCATCATCATCCAACAAAACCTCCACAGAATCTTTGTTCCTCGGAGATGGTAACTTCGATGCGAATGTTATCATGGTACTATCTGTCCTCTTGTGTGCTCTCTTCTGCTCCCTCGGTTTAAACTCCATCATCAGATGTGCCCTAAGGTGTTCCAACGTCATCGTCCTTAACAATAATAACGACTCAATTCCGCCGCCTCGAGTGGCCAACACCGGAGTGAAGAAGAAGGCATTGAAGACTTTCCCTACAGTGACCTTCTCTTCTGAGCTGATAAAGCTCCCAGGTTTGGACACAGAGTGTGCCATCTGTCTCTCGGAGTTCAACAATGGTGATCGTCTTCGGATTCTTCCCAAGTGTAACCATGGCTTCCACGTTCGTTGCATTGACAAGTGGCTCAGCTCGCATTCTTCTTGCCCTAAGTGCAGACACTGTCTTATACAGACATGTCAGAAGATCGTAGGGTCGACAACGACCACGACCACGACGTCGTCTCAATCGTCTTCTGTTATTCCGCCTTCTGAAACTATTGTGAGAATCGCACCTTTAGAACCAGAGGGTATGGTACGTAACTATGCCTAG 669 0.4709 MAASANSELLFQYSRRLLFLHSHLNSTSSSSSSSNKTSTESLFLGDGNFDANVIMVLSVLLCALFCSLGLNSIIRCALRCSNVIVLNNNNDSIPPPRVANTGVKKKALKTFPTVTFSSELIKLPGLDTECAICLSEFNNGDRLRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIQTCQKIVGSTTTTTTTSSQSSSVIPPSETIVRIAPLEPEGMVRNYA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1476 222 CDD RING-H2_PA-TM-RING 129 172 - -
Lele22g1476 222 Pfam Ring finger domain 129 172 IPR001841 -
Lele22g1476 222 SMART ring_2 130 171 IPR001841 -
Lele22g1476 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 177 IPR013083 -
Lele22g1476 222 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Lele22g1476 222 PANTHER RING-H2 FINGER PROTEIN ATL78 11 217 IPR044602 GO:0016567|GO:0016740
Lele22g1476 222 SUPERFAMILY RING/U-box 129 177 - -
Lele22g1476 222 FunFam RING-H2 finger protein ATL73 92 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1476 Lele-ChrLele22 20529790 20530458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1476 44 176 C3H Transcription Factor Family AT3G10910 48.921 4.48e-40 134