Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1475 ATGGCTTCCATGAACTCCGCTGTTCTTGCTTCTACCTACGCCATTTCTGGTGCGGCTTCTTCTGAATTCAACACCAAGCACACTTCCATGGCGGTTTCTGCTCCCAAATTGCCGGTCATCAAGGCCCAGCAATCCTCCTCCTCGTCCGCCGCTCCACAAGGAAGAAGAGCCGCGATCTCTCTGTTAGCCGCCACTGTCTTCACTGCCGCCGCCGCTTCTTCTGCGAATGCCGGCGTCATTGAGGAATACCTCGAGAAAAGCAAGGCCAACAAGGAATTGAATGATAAGAAGAGATTAGCGACGAGTGGTGCGAATTTCGCTAGGGCTTACACGGTGGAATTTGGGACCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAAGATCTTGCGAAGCAAAAGAAAGTGCCATTCATTAGTGAAGATTTGGAGCTGGAATGCGAGGGGAAGGACAAATACAAGTGTGGATCTAACGTTTTCTGGAAATGGTGA 489 0.5092 MASMNSAVLASTYAISGAASSEFNTKHTSMAVSAPKLPVIKAQQSSSSSAAPQGRRAAISLLAATVFTAAAASSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKYKCGSNVFWKW 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1475 162 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 38 162 IPR008796 GO:0009522|GO:0015979
Lele22g1475 162 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 162 IPR008796 GO:0009522|GO:0015979
Lele22g1475 162 FunFam Photosystem I reaction center subunit N 78 162 - -
Lele22g1475 162 Gene3D - 78 162 IPR044907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1475 Lele-ChrLele22 20523618 20524300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1475 1 133 Calmodulin-binding Proteins AT5G64040 62.676 1.09e-54 169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1475 22 20523618 20524300 Lele23g0526 23 3881120 3881802 hybridization
Lele22g1475 22 20523618 20524300 Lele24g1425 24 20231643 20232326 hybridization