Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1466 ATGCTTTCCAAAAGTAGCTTCATTTTCTCATCCATTTCGTCTTCATCATCGTCAATTCGTCCTCTTATCTTTCAAATTTGTCACTGCCCTAGCTCGTTGTATAGCTCCTCGTTACTTAGACGCCATTATCATGAATCCCGAAATATACCAGTCCCAGTATGGTGGGATTTTGAGAATTGCCACCCACCGTCTGATGCGAATGTTTACAGAATTACTCACCTCATAACGGAGGCAGTTAGAGCCAAAGGGATCATGGGTCCTATTCAAATTAAGGCATTTGGTGATGTTTATCAGCTCACAAGGACCAACCAGGAGGCTCTCGCGTCCATTGGGATCAAAATCATCCACGTTCCTAATGTGCGTGATGTTACTGCATTTTGTTGTTTATTCAAAAATTGGTGTCTCATTTTGATATTCCACTATTCTGTAGCTGGTGGAAAGAATAGTGCTGATAAGTCTCTTCTTATTGACCTTATGTATTGGGTTTCCCAGAATCCTCCTCCCGCACATTTGTTTCTAATTTCAAGTGATAAGGATTTTGCTGAAGCATTACATCTTTTGAGAATGAATAACTACAATATCCTAATTGCTGGTGTAGAGACTTCTTATCTTCTCTGCAGTGTAGCAACTATAGTGTGGCACTGGAGTTCATTAATTAGAGGAGAAAATCTTGATGGAAAACATTTCAATCATCCTCCAGATGGTTTGTACGGTTCTTGGTATGGTCACCATGATGCACCTCTTGAAGACACTTTCTCAGATGGAAAGCAATTTACACGTTCACAAACTGAGGAATTCCCTAAACCTATCTCAGGTTTGAACTTGCGCCCAATTCCAAAGGCTGTTGTTCGGCAGGTTCATCGGATATTGAATTTGAATCCAAACGGCATCACTTTATCATGGCTTCGAACAGAGTTGGAAAGAGCTGGTATATACTTTGATAAAGATTACTATGGATATAAAAGCTTTTCCCAGTTTCTTTCATCAGTGGCACGTGTACACCTTCAGGCTGTACCTGATAGAGGACTTATTGCACATCGCATCCCCAAAGAATCTCCAGAACCCATTGAAAGCAGTTTTGTACCATCAACAGAATTAGTTGAAAATGAGGAGTTGAATCATGTGTCTGCTTCAACAGGAACTTCTGAAAAGTTAAATGCTGATGATAAATATGCTAAGCCAACAAAAAGTAATGCTTTTAGTAAACATACAACTTTCTGGGGTTGGATTAAAAGTTGGTGGCCATTCGGGAAAAAAGTTGGAAACACGCATAATTTGACTGCTCATGGGAATGAGACAGTTAGTAATGCTAAAGAGCCTGAGTTATTGGGTTTGAAACAGACAGACAGTCATGATAAAGAGCCTGAGTTATCAAATCTGAAACAGAGTGTTAGTCATTCTGAAGAGCTCCGGTCATTAGAACAGAGACAAATGGCTAGTCAATTTAAGGAGCCTGAGTTATCAGAACTGAATCAGACATTGAATCAATATAGAAAGCCAAAGTTATTTTCTTGTAGTTCCTTTTGGAAGGAAATGGAATGTTTTGTTTTCAGCTCCAAAGGAGCAATTCTTTTCTTCCACTCAATAAGCAGGGAGGATATGGCGCTCAGTTTTAAAAAGTATGGACCTCATGTTCTCCGCTCTCTTAGTAAATATGATCTCCTTCTATTGGTGGATTTGTTAATATATGAGAAAAAATGGTTGGAGGAAAGGCCTTCTCAGACCTTTCCTTTCCGTACCATTCCAAACAGAACAACACAAAGTAATTTGCAGACTAAGTCTAGAAGTGACATTTTGGCAAATGTTCAGAAACTTGTGAGTGAGATGTTGAGAGAACACCCAGATGGGTGTAATATGGGTCTGATACCAGATCGCTTTCAGGAGAAGTATGGCTATCATTTAGATGTTGGGAAGCTTGGTTATTCTAAGTTATCGTCCGTTCTACATAGTCTGCCTGGAGTGAAAACACAGCATGGTCATTTCTTTCCTACAAATCATGGCATATGTGCTTCTGATGAGGAAACTTCTATTCTCAAAACTCAAGAGAAAAAACTAAGTGATGGAGTATACCACTATTCAGAGAATGATCACAAAGACTACCCATGGGAGGAATTAGGGCCTGTTTCTGTCAGCAATGCCAATCAGAGTGACCTCGAATCAAAACCAAGGCAGGAAGCAATAGAGCTGAAGACTGCAATTGATCCTGATTATGAACCTGATCTCTCTGATGATGATTCTTCCCAATCTCGAGGAGATAACTCCTGTTTAACTCAATCAGAGTATGATCATTTCTTTCCTGCAAATCATGACATGTGTGCTTCTTGTAAGGAAACTTCAATTGTCAAAACTCAAGAGACAAAACTAAGTGATGTAGTGTACCCCTATTCTGAGAATGAGTTCTATGATTCGTACTCTGAAGATGTTCGGAAAGACTCCCCATGGGGGGAATTAGGACCTGTTTCTGCCAGCAATTCCAATGAGAGTGACCTGGAGTCAAAACCAAGGCAGGACACAATAAAGCTGAAGGCCGCAATAGATCCTGATTATGAACCTGATCTCTCTGATGATGATTTTTCCGAATCTGGAGGAGATGAAACCTGTTTAAGTCAGTCAGAATGGGAAGGTGAGCCAAAACTTAACGTGGAAGACGGTGCTTTGCAAAATCTGTATTCAGTGTATGTCAGTCAGGAAGGAGAGGATAGTGTGAAACCGAATAAGGCCAATACAGTAGGCAATGGTCTGACTGGTGGTTTAAATCCATCAAGTATTTCCACTCCGGCTACCAGTTCAGGAATTCATTCAGGGGGCTATAAAGAGAAGCACAAGCCTAAGAAAAACTGTTCATCTGATGCTGAACCAGTCTCACGCAAGAATAAGGAGCTGATTGGAGGGATATTACAATGCTTGAAAAGGGAACATGACTTGAAGATGCCGAATTGA 2940 0.4037 MLSKSSFIFSSISSSSSSIRPLIFQICHCPSSLYSSSLLRRHYHESRNIPVPVWWDFENCHPPSDANVYRITHLITEAVRAKGIMGPIQIKAFGDVYQLTRTNQEALASIGIKIIHVPNVRDVTAFCCLFKNWCLILIFHYSVAGGKNSADKSLLIDLMYWVSQNPPPAHLFLISSDKDFAEALHLLRMNNYNILIAGVETSYLLCSVATIVWHWSSLIRGENLDGKHFNHPPDGLYGSWYGHHDAPLEDTFSDGKQFTRSQTEEFPKPISGLNLRPIPKAVVRQVHRILNLNPNGITLSWLRTELERAGIYFDKDYYGYKSFSQFLSSVARVHLQAVPDRGLIAHRIPKESPEPIESSFVPSTELVENEELNHVSASTGTSEKLNADDKYAKPTKSNAFSKHTTFWGWIKSWWPFGKKVGNTHNLTAHGNETVSNAKEPELLGLKQTDSHDKEPELSNLKQSVSHSEELRSLEQRQMASQFKEPELSELNQTLNQYRKPKLFSCSSFWKEMECFVFSSKGAILFFHSISREDMALSFKKYGPHVLRSLSKYDLLLLVDLLIYEKKWLEERPSQTFPFRTIPNRTTQSNLQTKSRSDILANVQKLVSEMLREHPDGCNMGLIPDRFQEKYGYHLDVGKLGYSKLSSVLHSLPGVKTQHGHFFPTNHGICASDEETSILKTQEKKLSDGVYHYSENDHKDYPWEELGPVSVSNANQSDLESKPRQEAIELKTAIDPDYEPDLSDDDSSQSRGDNSCLTQSEYDHFFPANHDMCASCKETSIVKTQETKLSDVVYPYSENEFYDSYSEDVRKDSPWGELGPVSASNSNESDLESKPRQDTIKLKAAIDPDYEPDLSDDDFSESGGDETCLSQSEWEGEPKLNVEDGALQNLYSVYVSQEGEDSVKPNKANTVGNGLTGGLNPSSISTPATSSGIHSGGYKEKHKPKKNCSSDAEPVSRKNKELIGGILQCLKREHDLKMPN 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1466 979 Pfam OST-HTH Associated domain 530 588 IPR025677 -
Lele22g1466 979 PANTHER LIMKAIN B LKAP 34 608 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lele22g1466 979 MobiDBLite consensus disorder prediction 901 932 - -
Lele22g1466 979 Pfam OST-HTH/LOTUS domain 281 342 IPR025605 -
Lele22g1466 979 Pfam OST-HTH/LOTUS domain 599 659 IPR025605 -
Lele22g1466 979 Gene3D - 592 661 IPR041966 -
Lele22g1466 979 MobiDBLite consensus disorder prediction 721 747 - -
Lele22g1466 979 MobiDBLite consensus disorder prediction 701 754 - -
Lele22g1466 979 MobiDBLite consensus disorder prediction 447 466 - -
Lele22g1466 979 Gene3D - 45 216 - -
Lele22g1466 979 MobiDBLite consensus disorder prediction 806 879 - -
Lele22g1466 979 ProSiteProfiles OST-type HTH domain profile. 598 672 IPR025605 -
Lele22g1466 979 Pfam NYN domain 51 209 IPR021139 GO:0004540
Lele22g1466 979 ProSiteProfiles OST-type HTH domain profile. 278 349 IPR025605 -
Lele22g1466 979 MobiDBLite consensus disorder prediction 896 958 - -
Lele22g1466 979 MobiDBLite consensus disorder prediction 830 849 - -
Lele22g1466 979 MobiDBLite consensus disorder prediction 935 957 - -
Lele22g1466 979 CDD PIN_limkain_b1_N_like 50 197 - -
Lele22g1466 979 CDD LOTUS 602 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1466 Lele-ChrLele22 20458433 20461901 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1466 53 221 C2H2 Transcription Factor Family AT5G61190 35.294 4.40e-27 117