Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1463 ATGGATTTGGACGATTTCCGATCAATATTGGAGACGGCTGGTGTGGATATATGGATGTTCATCGACACTGCAATAGACGTAGCTTCCATTGAGTACAACAACGAGTTAAAGCGTCGAAGGGATGGAATCGTTCAGCGTCTCTACGCAGCCACTTCAGCTCCGGGACGGTGTCTGAACTGCGAAGCGATTGGGCTCGAATCCAATGGCCAGGAAATAAGCTCACCAATTGAGAAACAGAGCACTCCTGAGCTGAAAAGAGATGCCTCGCCTGGAACACCTCACTCTATTGGTCAATATTACGACGATTTAGATCCTTATGGAGGTCTTCTTGATGATGGACAAAAGAAGATTCAAGAGATCAAAGAGCAACTTAAGGATCCTGACCAGCCTGAAGATTATGTGGTGGAGTTGCTACAGAATCTAGCGGACATGGATATTACATTCCAAGCACTAAAGGAGACTGATATTGGGAGGCACGTTAATCGGTTGCGCAAGCATCCATCCAATGATGTTCGGAGATTGGTGAAGCTACTTGTCAGGAAATGGAAGGAGATTGTAGATGAATGGGTGAAGGTAAATCAACCAGGCGATGTTGCTTCTGCAGTCATGGCTAATGGAGATTCGCCTATGCAGAAAAACGCCCAAAACGGGCACAACCAGATTCCTGATTTTGCATACTCGCCTAATCCGCACTATGGGAGTTCTGGGTCAGAGCGAAACTATTCAGAAGCTGAACCAAAGTCAAAGACTCTTTCTCAAAGAGCGCCCCCAAAACCTGCAACCCCAGTGCCTATTCCTGCTCCTGCTCCTCAAAACAGAAAGAGAGAACAGAGAGATAGCAATTTTGAAGCAGATAGACTTGCTTCGGCAAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGACAAAGAACGATCCAAGTGATGGACATCCATGAGATCCCAAGACCCAAGAAAGCCTTCTTTCCAAAGAACAAAGGTGGCGCCGGTTCTCAGGCTAGGCACTGGTAA 1023 0.4663 MDLDDFRSILETAGVDIWMFIDTAIDVASIEYNNELKRRRDGIVQRLYAATSAPGRCLNCEAIGLESNGQEISSPIEKQSTPELKRDASPGTPHSIGQYYDDLDPYGGLLDDGQKKIQEIKEQLKDPDQPEDYVVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKVNQPGDVASAVMANGDSPMQKNAQNGHNQIPDFAYSPNPHYGSSGSERNYSEAEPKSKTLSQRAPPKPATPVPIPAPAPQNRKREQRDSNFEADRLASARRRLQENYKEAENAKRQRTIQVMDIHEIPRPKKAFFPKNKGGAGSQARHW 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1463 340 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 340 IPR044790 -
Lele22g1463 340 MobiDBLite consensus disorder prediction 70 95 - -
Lele22g1463 340 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 111 197 IPR035441 -
Lele22g1463 340 MobiDBLite consensus disorder prediction 320 340 - -
Lele22g1463 340 MobiDBLite consensus disorder prediction 206 223 - -
Lele22g1463 340 ProSiteProfiles TFIIS N-terminal domain profile. 115 189 IPR017923 -
Lele22g1463 340 MobiDBLite consensus disorder prediction 201 282 - -
Lele22g1463 340 Pfam TFIIS helical bundle-like domain 137 186 IPR017923 -
Lele22g1463 340 CDD TFIIS_I 114 187 - -
Lele22g1463 340 SMART TFS2_5 117 188 IPR003617 GO:0005634
Lele22g1463 340 Coils Coil 284 311 - -
Lele22g1463 340 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 115 194 IPR035441 -
Lele22g1463 340 MobiDBLite consensus disorder prediction 230 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1463 Lele-ChrLele22 20448178 20450152 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele22g1463 Med26 1.3e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1463 22 20448178 20450152 Lele23g0538 23 3940120 3942080 hybridization
Lele22g1463 22 20448178 20450152 Lele24g1415 24 20159534 20162336 hybridization