Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1460 ATGGACTTTGACGAGTATGATTACTTGGAAAAAACAGTGGAGGAGCAGGGAGATCAGGATTTGACGAAGAGCAAGGAGAAACACGATAAGAGTGAGAGGGCTTACCGGAAGCGTGACGTCGACGATGATGTTGACATTGAAGACAAGAAGAGCAAGAGGTCTAGGGGCGACGACGAGAATGGGTCGAGGAAAGATCGTGAGGACCGCGACAGAGAACGGTCTAGTCGAGAAAAGGAACGGCATAGGAGCAGCAGAGACAGAGAGAGGGACGGTGATAGGGAGCGAGAGAGGAGGAGTAGTAAGGAGAGAGACAAGGAGAGGGAAAGAGAGAGAAGGGATAAGGACAAGGAGAGGGAGAGGGAGAGGGAGAGAAGAGATAGAGACAGTGAGAGGGAAAAAGAACGGGAGAGAAGGGAGAGAGAGAGGGAGGAGAAGGAGAGGTCCAGGAGAAGCAAAAGTCGTTCTGATCGAGACAGAGAAAGAGAATTGGAGACTAGAGATAGCCGGAGATTTAGGGATAAGAAAGAGGCCGTGGAACCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTCTAAAAGCAACAGAGAGAGATGTTTATGAATTCTTCTCGAAAGCTGGAAAGGTGAGGGATGTCCGCTTGATCATGGATAGGAATTCAAGGCGATCTAAAGGAGTTGGGTACGTTGAATTTTATGACGTGATGTCAGTGCCAATGGCAATTGCCCTTTCTGGCCAACTGCTTCTGGGACAACCTGTAATGGTCAAACCTTCAGAGGCTGAAAAAAACCTTGTTCAGTCTAATACTACTAGTGGAGCTGCAGGGGTAGCAGGACCATATGGAGCAGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTTAACATGACTGAGGGTCAGCTGAGAGAGATTTTTGAGCCGTTTGGTCCAGTGGAGCTTGTTCAGTTACCCCTTGACATGGAGACAGGACATTGCAAGGGTTTTGGCTTCATACAATTTGCTAATCTCGAACATGCCAAGACGGCTCAGAGTTTGAACGGAAAATTAGAGATTGCTGGTAGGATTATCAAGGTTTCATCAGTAACAGATCATGTTGGAGGCCAAGATACGACTGCAAAATCTGCAGATTTGGATGATGATGAAGGTGGATTGTCATTGAATGCTCAATCAAGAGCGATGCTTATGGCAAAGTTGGATCGTTCTGGTATTGCTACAAGCATTGCAGGGTCTATGGGTGGTGTGCCTCTTGTGAATGGCTCAGCCCCTGCCCAGCAGGCTATTAGTTTAACAGCTGGGGGTCCAGATATAGTACCTGCAACAGCTCTCCCAACAGCCGTTATGCCTAACCCAGCAGCAGAGCCAGTTGGAACCCCCAGCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAACTACTGAGACAGAACCAGATTTTGATGAGGATATCAAGGAGGATGTAGCAGAAGAATGTTCTAAATTTGGTCGGGTTAAGCATATTTATGTTGACAAAAATAGTGAAGGTTTTGTGTATCTGCGGTTTGAAACAGTGCAAGCAGCTAGTGCTGCTCAACAGGCAATGCACTTGAGATGGTTTGCCCGCAGGTTGATTTCAGCAGTGTACATGCAACCTCAGGTATATGAAGCGAAGTTTAAATGA 1674 0.4707 MDFDEYDYLEKTVEEQGDQDLTKSKEKHDKSERAYRKRDVDDDVDIEDKKSKRSRGDDENGSRKDREDRDRERSSREKERHRSSRDRERDGDRERERRSSKERDKERERERRDKDKERERERERRDRDSEREKERERREREREEKERSRRSKSRSDRDRERELETRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDMETGHCKGFGFIQFANLEHAKTAQSLNGKLEIAGRIIKVSSVTDHVGGQDTTAKSADLDDDEGGLSLNAQSRAMLMAKLDRSGIATSIAGSMGGVPLVNGSAPAQQAISLTAGGPDIVPATALPTAVMPNPAAEPVGTPSECLLLKNMFDPTTETEPDFDEDIKEDVAEECSKFGRVKHIYVDKNSEGFVYLRFETVQAASAAQQAMHLRWFARRLISAVYMQPQVYEAKFK 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1460 557 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 266 IPR000504 GO:0003723
Lele22g1460 557 FunFam HIV Tat-specific factor 1 homolog 465 548 - -
Lele22g1460 557 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 369 IPR000504 GO:0003723
Lele22g1460 557 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 258 IPR000504 GO:0003723
Lele22g1460 557 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 362 IPR000504 GO:0003723
Lele22g1460 557 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 490 541 IPR000504 GO:0003723
Lele22g1460 557 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 556 - -
Lele22g1460 557 Coils Coil 126 151 - -
Lele22g1460 557 CDD RRM1_RBM39_like 190 262 - -
Lele22g1460 557 FunFam Splicing factor CC1-like 275 380 - -
Lele22g1460 557 FunFam RNA-binding protein 39 isoform X1 182 274 - -
Lele22g1460 557 Gene3D - 287 382 IPR012677 -
Lele22g1460 557 Gene3D - 182 275 IPR012677 -
Lele22g1460 557 Gene3D - 461 557 IPR012677 -
Lele22g1460 557 MobiDBLite consensus disorder prediction 1 189 - -
Lele22g1460 557 TIGRFAM SF-CC1: splicing factor, CC1-like family 74 555 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lele22g1460 557 CDD RRM3_RBM39_like 465 547 - -
Lele22g1460 557 SUPERFAMILY RNA-binding domain, RBD 291 549 IPR035979 GO:0003676
Lele22g1460 557 SMART rrm1_1 467 544 IPR000504 GO:0003723
Lele22g1460 557 SMART rrm1_1 190 262 IPR000504 GO:0003723
Lele22g1460 557 SMART rrm1_1 292 365 IPR000504 GO:0003723
Lele22g1460 557 MobiDBLite consensus disorder prediction 10 188 - -
Lele22g1460 557 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 466 549 IPR000504 GO:0003723
Lele22g1460 557 ProSitePatterns Rrf2-type HTH domain signature. 404 422 IPR030489 -
Lele22g1460 557 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 384 484 IPR029123 -
Lele22g1460 557 SUPERFAMILY RNA-binding domain, RBD 182 269 IPR035979 GO:0003676
Lele22g1460 557 CDD RRM2_RBM23_RBM39 293 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1460 Lele-ChrLele22 20422413 20430178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1460 263 364 Eukaryotic Initiation Factors Gene Family AT4G34110 33.010 8.82e-07 50.1