Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1458 ATGTGCTTCTTAAAGGTAGCGAATCCTACATACAACCTTGTTGATGAACACAACACAAACCCTAACGTTTCTTGTTCGTCGTCGCTGACAATTCAGTTTCCGGGTATGGATAGGGACAGAGAGATGTCTGAGATGATCTCTGCTTTGACGCACGTCGTTGCCGGAGATATTCCTGGTGATTCCAGTGAGATTTCTGGCGGTGGCGGCCGTGGTTGCGGTGAAGGTGACGGTGGAGGTGAAGGGGGCTCTGTTACATTAAACTCGCCGTCGGATTCAACGACAACGCCGTCTTCTTCATCCTATTCTTCGTCTTACGGTGGTAACTCTGTTTTGAAGAGAAGAAGGGAAGATAATATTACAGGCTCTTCTTCCGCTGCTAGTATTCAAACAGGAGAAGGTTCAAGAGGAGAGAGAGTAGTGCAAATGGGGAATGCAGTGTATGAATATAGCTGTAATACAGAGAATGTGAGAGGCTCAGAAGAAGGAAGAAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGCAAGTGGGCAGCTGAAATCAGAGATCCTTTTAAAGCTGCCCGTGTTTGGTTGGGCACTTTCGACACGGCGGAGGCGGCTGCCCAGGCCTATGACGAAGCTGCCCTGCGTTTCAGAGGCAACAAGGCCAAGCTCAATTTCCCCGAAAATGTCAGACTCCGGCAACCCCCTCCGGCGCCTCAGGCGACAACGGCGGCGGCGACCCATTTGAGAGGTTCGGGTTCTTCGAGTACCCTTTTGTCCATTCCAACGTCCACCGAACCGATTGTTCATACTGAAGCCCTTCACCACCGCCACCCTCTCATGAGTTCTCAGCCGACGGCGTCCACTGATTTTTATAGCTACTCGCAGTTTTCGGAGTTTCCCATGAATTTTTATGATCAAATGGTTATGTCATCTTCAATAGCTCATCATTTTCAGTCGTCCACGTTGCCGTCAGCTTTGTCATCTTCTTCTTCTTCTTTGATGGCATCTTCTATTAGCTCTCAGCATCAGCAAGGAGGTTTACCGTTTCCGGGTTGGGTCATACCGGAAAGTGGTTCCGAATACGTACCATCAGCATGGTCATCTTCGGGTCATAGTGCTTCTTCCTCTGTATGA 1122 0.4947 MCFLKVANPTYNLVDEHNTNPNVSCSSSLTIQFPGMDRDREMSEMISALTHVVAGDIPGDSSEISGGGGRGCGEGDGGGEGGSVTLNSPSDSTTTPSSSSYSSSYGGNSVLKRRREDNITGSSSAASIQTGEGSRGERVVQMGNAVYEYSCNTENVRGSEEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAAQAYDEAALRFRGNKAKLNFPENVRLRQPPPAPQATTAAATHLRGSGSSSTLLSIPTSTEPIVHTEALHHRHPLMSSQPTASTDFYSYSQFSEFPMNFYDQMVMSSSIAHHFQSSTLPSALSSSSSSLMASSISSQHQQGGLPFPGWVIPESGSEYVPSAWSSSGHSASSSV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1458 373 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Lele22g1458 373 PRINTS Ethylene responsive element binding protein signature 188 204 IPR001471 GO:0003700|GO:0006355
Lele22g1458 373 Gene3D AP2/ERF domain 164 224 IPR036955 GO:0003700|GO:0006355
Lele22g1458 373 ProSiteProfiles AP2/ERF domain profile. 165 222 IPR001471 GO:0003700|GO:0006355
Lele22g1458 373 PANTHER DNA-BINDING DOMAIN 129 306 IPR044808 GO:0003700|GO:0009873
Lele22g1458 373 SMART rav1_2 165 228 IPR001471 GO:0003700|GO:0006355
Lele22g1458 373 CDD AP2 165 224 IPR001471 GO:0003700|GO:0006355
Lele22g1458 373 Pfam AP2 domain 165 214 IPR001471 GO:0003700|GO:0006355
Lele22g1458 373 SUPERFAMILY DNA-binding domain 165 223 IPR016177 GO:0003677
Lele22g1458 373 FunFam Ethylene-responsive transcription factor 2 164 223 - -
Lele22g1458 373 MobiDBLite consensus disorder prediction 83 109 - -
Lele22g1458 373 MobiDBLite consensus disorder prediction 56 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1458 Lele-ChrLele22 20401556 20403381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1458 173 311 AP2-EREBP Transcription Factor Family AT5G64750 51.389 1.12e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele22g1458 AP2 1.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1458 22 20401556 20403381 Lele22g1458 22 20401556 20403381 ECH
Lele21g1465 21 23055134 23056898 Lele22g1458 22 20401556 20403381 ECH
Lele22g1458 22 20401556 20403381 Lele23g0547 23 4013582 4015354 hybridization
Lele22g1458 22 20401556 20403381 Lele24g1410 24 20108499 20110499 hybridization