Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1418 ATGGCGGATCGCTCAGACGATTCGCCTCTAATCCCCCCAAAGCTTATCACTGACCCTAGCGAGATCGACCTGGAAGCCGGTCCCAGCGAACAAATCCAGTGCCGGATTTGCCTCGAGACTGATGGTAGGGACTTCATAGCGCCTTGCAAGTGCAAAGGAACATCAAAATATGTACATCGAGAATGTCTGGATCATTGGCGAGCTGTTAAGGAAGGATTTGCATTTGCTCATTGCACGACCTGCAAAGCTCCTTATTATTTGCGTGTCCATGTTGCTGCTGATAGGAAATGGCGAACCTTGAAATTTCGGTTCTTTGTCACGAGAGACATTTTGTTTATATTTCTGTCTGTCCAGCTTGTCATTGCTTCACTGGCTTATTTGGTTTATCTAATGGATGGTTACCAGCAATACTGGCTTCGTCATATTTGGGGTTTTGATAGTGAGCTTAGCTTTTACTACATATGCGGGGCTTTATTGTTTTTTGCTTTGCTTGGCCTGTCTGGCTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTAGCTCAGCCTTGTCGGGAATTATGTCTTTGTTGCTGTCAACCTGGGGTCTGTGCGGACTGTCATTTGCCAGGAACTCTCTGCATGTGGACTGACTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCTACTGAATGTGGCGGATGCCTTGGAGGTGCTGGGGAAGCAGGGCTACCTCTACTGTTTATAATGGCTCTGATTGTTCTTGGACTTTTTACTGTAATTGGAATATTTTACAGTGTATTGGTGGCTACCATGGTAGGACAGCGAATATGGCAGCGACATTACCACATACTTGCAAAAAGAATGCTAACAAAGGAGTACGTTGTTGAGGACGTTGATGGGGAAATGACAGGATCTGATTGGTGCCCCCCGCCACTTCCCCCTGAGCACGTTCAGCAGCTAAAAACTCTCGGCCTCCTATGA 972 0.465 MADRSDDSPLIPPKLITDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYYLRVHVAADRKWRTLKFRFFVTRDILFIFLSVQLVIASLAYLVYLMDGYQQYWLRHIWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWCPPPLPPEHVQQLKTLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1418 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Lele22g1418 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Lele22g1418 323 SUPERFAMILY RING/U-box 29 86 - -
Lele22g1418 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 95 IPR013083 -
Lele22g1418 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 322 - -
Lele22g1418 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Lele22g1418 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1418 Lele-ChrLele22 19979104 19982754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1418 1 323 C3H Transcription Factor Family AT2G22120 85.494 0.0 563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1421 21 22685994 22694061 Lele22g1418 22 19979104 19982754 CCT
Lele22g1413 22 19926547 19933075 Lele22g1418 22 19979104 19982754 CCT
Lele23g0594 23 4436143 4444362 Lele22g1418 22 19979104 19982754 CCT
Lele24g1365 24 19694902 19699520 Lele22g1418 22 19979104 19982754 CCT
Lele22g1418 22 19979104 19982754 Lele22g1418 22 19979104 19982754 ECH
Lele22g1418 22 19979104 19982754 Lele23g0587 23 4398629 4400597 hybridization
Lele22g1418 22 19979104 19982754 Lele24g1371 24 19747063 19750715 hybridization