Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1416 ATGGATATCATATTTGCATCTAGGAATTCCTTACAAGAAGCCTTGATGGCTCTCTCTGAGATCTTCTCTCAACTTTGCACCAAGGCCATAGTTCTGTTGGCTCTGCTTCTAATACAACTCATGCTCCTTATAAAGAAGCTCAGGTCAGATGCTCGTTCAGTTACAACCACTCAATATCTCAAACTCATCGAGCAGAAGAATCCCACAATTTGTTTCACCAAGAGATTGAGGCAAGAAGATGCAGAGTGCAGGGTGTGCTTATCTGAATTCCAGGAAGGGGAAAAGGTGAGGAACTTGAAATGTAAACACACATTTCACAGAGATTGCTTGGACAAGTGGTTGCGGCAATATTGGGCTACCTGCCCTCTTTGCAGGAACCAAGTTCTTCCAGATGATGTTGTGGCCAAGTATCGTGAGCTCCAGAATCAGGTAGAATCTGATGGGAATGATGAGCAGATTATGTTCTTGTTATCCGCGTTAAGTGGAGGAAGTTCTTTGCATAGATTCCTTTAG 513 0.4327 MDIIFASRNSLQEALMALSEIFSQLCTKAIVLLALLLIQLMLLIKKLRSDARSVTTTQYLKLIEQKNPTICFTKRLRQEDAECRVCLSEFQEGEKVRNLKCKHTFHRDCLDKWLRQYWATCPLCRNQVLPDDVVAKYRELQNQVESDGNDEQIMFLLSALSGGSSLHRFL 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1416 170 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Lele22g1416 170 SUPERFAMILY RING/U-box 64 131 - -
Lele22g1416 170 Pfam Ring finger domain 82 125 IPR001841 -
Lele22g1416 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 130 IPR013083 -
Lele22g1416 170 CDD mRING-H2-C3H2C2D_ZSWM2 82 125 - -
Lele22g1416 170 PANTHER - 17 165 - -
Lele22g1416 170 SMART ring_2 83 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1416 Lele-ChrLele22 19963968 19965165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1416 81 136 C3H Transcription Factor Family AT1G15100 53.571 4.67e-19 77.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1416 22 19963968 19965165 Lele22g1416 22 19963968 19965165 ECH
Lele22g1416 22 19963968 19965165 Lele24g1369 24 19731162 19732356 hybridization