Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele22g1409 | ATGTCGGTGGTTCTGTGGAGTGACGGCTACAACTGTGAAAGTGCCCAAAGTGAACTGAATATGACGACTACAGTTGCTTGGAGGTTTGGTTCCAATAATGGCGGCGGCCTTGCTGCCAACGATATGGAAAGAAATGGCGAGGGGAACATTCCAGACTCAGAGCCCCCAACTCCACATTCTGTTTTGAAGATGGGATTGAGAGAGCGCAGCAGCGGCATGGAGGATCCAGATGGGACATTAGCAAGCGTGGCCCAATGCATTGAGCAGCTGCGACAGAGCTCATCCTCCGCACAAGAGAAGGAGTACTCCTTGAAGCAGTTATTGGAGCTTATTGATATGCGTGAAAATGCGTTTAGTGCTGTTGGATCTCATTCTCAGGCAGTACCAGTGCTTGTTTCTCTTCTCCGATCTGGTTCATTGAGTGTGAAAATTCAGGCAGCAACTGTTTTGGGCTCCCTTTGTAAAGAAAATGAGCTAAGAGTGAAAGTCTTGCTTGGAGGATGCATTCCCCCATTGCTTGGGCGACTAAAATCCAGTTCAGCAGAAGGTCAAGTTGCTGCTGCAAAGACTATTTACGCTGTCTCTCAAGGCGGCTCAAAAGACCACGTTGGATCAAAAATTTTTTCAACTGAAGGAGTAGTACCTGCGCTTTGGGCGCAGCTTCAGAAGGGGCTGAAGACTGGAAATGTAGTTGATGGTTTATTGACCGGAGCCTTGAAAAACCTGTCCAGTAATACCGAGGGATTCTGGAATGCAACAATACAAGCTGGAGGAGTGGACATATTAATGAAGTTATTGACAACAGGTCATCCTAGCACTTTAGCTAATGTGTGCTTCTTACTTGCCAGCATGATGATGGAGGATGCATCTGTTTGTTCAAAACTGTTGACTTCAGAGGCGACAAAACAACTCCTGAAATTATTAGGCCCTGGTAATGATGCCCCTATTAGAGCTGAAGCAGCTGGTGCTCTGAAATCTTTGTCTTCTCAGTGCAAAGAAGCAAGGCGAGAGATAGCTAACTCTAATGGCATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCAAAAGAGTTCATGCAGGGTGAGCATGCTCAAGCATTGCAGGAAAATGCTATGTGTGCTCTAGCTAACATCTCTGGTGGTTTGTCTTACGTGATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCAGCTACTCAAATTTCAGATACACTAGGGGCTTTGGCTTCAGCTCTTATGATATATGATAAAAAGGACGAAGCTACTAGGACATCAGATCCGCTGGTAGTTGAGCAAACATTGCTCGAGCAATTCAAATCTCATTCGCGGTTTCTTGTGAAGGAAAGAACAATTGAAGCCCTGGCTAGTTTGTATGGAAATCCCGTACTGTCAATTAAACTCGTAAATTCATATGCAAAACATTTGCTAGTTGGATTAATAACGATGGCTGTTAATGAAGTACAAGATGACCTTATAAGGGCTCTCCTTACATTGTGCAACAATGAAGGCAGTCTTTGGCGTGCCCTTCAGGGCCGTGAAGGAGTTCAACTATTGATATCTCTCCTAGGGCTCTCATCAGAACAACAGCAAGAGTGTGCAGTTGCTCTGCTATGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGCGGTATACCTCCATTAGTTCAAATTTTGGAGACAGGATCCACAAAAGCAAAGGAAGACTCAGCAAAGATCCTTACAAACCTGTGCAATCACAGCGAAGATATACGTGCTTGTGTGGAGAGTGCTAATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGGAGCTCAAATGGGAAGGAGATAGCGGCGAAAACCTTAAATCACTTAATTCATAAATCTGATACCACCACAATCAGCCAGCTTACAGCACTATTGACAAGTGATCTACCTGAATCTAAGGTCTATGTTTTGGATGCTTTGAGAAGTATGCTGTCAGTAGCCCCTCTTAGCGACATTCAGCGAGAAGGTAGCGCTGCAAGTGATGCAATTGATACGATGATAAAATTAATGAGCTCTACCAATGAAGAAACTCAGGCTAAGTCAGCATCAGCTCTGAGGTGTTGGTTGGACTTAGTTTCAGGCATCTTTGAATTGAGGAAAGATGTGCGTGAAAGCAGCGTCGCAGTTAAAGCCCTTTTGTCTGCCATGAAGTTGCTTAATATTGAATTTGAAGGCATCCTAATAGAGTCTTCACGCTGCCTTGCAGCAATATTTCTTTCGATTAAAGAGAACAAGGATATAGCTGCTGTTGGTAGAGATGCTTTACTCCCCTTAGTTGCACTAGCAAATTCTTCTACTTTGGAAGTTGCAGAGTTGGCAACATGTGCGGTGGCTAATCTTATTTTAGATAGTGAGATTTCAGAGAAAGCTGTTGCCAAAGAAATTATCATCCCAGCTACCAGAGTATTACGTGAAGGTACAATATCTGGAAAGACACATGCAGCATCAGCAATTGGTCGGCTCATACATTCTCGACAAGTTGATTATTCTATAACTGAATGTGTGAATCGTGCTGGGACGGTACTTGCTCTGGTTTCCTTCCTGGATTCTGCTATTAATGGATCAGTTTCCACGTCTGAGGCTATAGAAGCACTTGCTGTTCTGTCCAGGTTGGAACCGAGCAGTGCACATGTTAAACCAGCATGGGCTGTATTGGCTGAATTCCCTGAAAGCATAAACCCAATAGTGCTGTCTATTGCTGATTCAACACCAGTGTTTCAGGATAAAGCTATCGAGATATTATGCCAGTTATGCAGGGATCAGCCTGTTGTTCTTGGAAACAATGTTGTTGCGGCCTCAGGATGCTTGTGTTCATTGGCTAAAAGGGTAATTGGTACCAAAAATGTAAAGGTTAAAATTGGGGGAGCTGCACTTCTGATTTGTGCTGCCAAAGTAAACCACCGGAGACTGATGGAGGAACTCAACCAAACAAACTTGTCTGTTGATCTTATTCAATCTCTTGTTGGTATGCTTTCTTCTACGTCGCCTTTGTCAAATCAGGGTGAAGAAAACAAGGAATTCATTAGCATTATCATACAAAGAAAAGAAGATGCCAATGATGGTAAATCCAACACACACACTGCCATTGTATCTGATTCCAACTTAGCTATATGGTTATTGTCTATTCTTGCTTGTCATGATGAAAAATGTAAAATTGCAATAATGGAGGCTGGAGCAATTGACATTTTCACTGAAAGAATCTCAGACTGTTACTCACAATATACCCAGATTGATTATAAAGAAGATAGTAGCATGTGGATTTGTGCATTGCTGTTGGCTGTATTATTTCAAGATAGAGATATCATCAGAGCACACGCTACCATGAAATCTGTACCAGCTGTTGCCAGTTTATTGAAGTCGGAGGAATTAGCTAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGAAGCAGGGGGACGCTACTCTCTGTTGCGAACTCAGGGGCTGCAAGTGGGCTAATCTCCTTACTTGGCTGTGCTGACATTGATATACAGGACCTTCTGGACCTGTCAGAGGAGTTCTCCTTGGTTCGTTATCCTGATCAAGTTGCTCTTGAGAGGCTTTTCAGAGTTGATGACATCAGGGTTGGTGCCACTTCGCGGAAGGCAATACCGGCACTTGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCGTTTTTAGCTCTTGGACTTCTAACTCAGCTCGCCAGAGATTGCCCATCTAATAAGATTGTAATGGTCGAATCTGGGGCCCTGGAGGCACTTACAAAGTATCTTTCATTGGGTCCCCAAGATGCCACTGAAGAAGCTGCTACTGATCTACTCGGAATTCTTTTTGATAGTGCTGAGATACGGAGACATGAGGCAGCATTTGGTGCTGTTACTCAACTTGTAGCTGTGTTGCGTTTAGGGGGAAGAGGTGCAAGGTACAGTGCTGCCAGAGCCCTGGAAAATTTGTTCTCTGCTGATCAGATTAGGAATGCAGAGACTGCCCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAACACTGGTTTAGAGAAGGAGCAGCATGCTGCAATTGCTACATTGGTTAGGCTCCTAAGTGAAAATCCTTCGAGAGCACTAGCTGTTGCTGATGTGGAAATGAATGCAGTGGATGTGCTTTGCAGGATCCTTTCCTCAAATTGTTCATTGGATCTCAAAGGTGACGCTGCTGAATTATGTTGTGTTCTGTTTGGAAATACACGGATTAGGTCCTCAGTGGCTGCTGCACGCTGTGTTGAACCTCTAGTTTCTCTCCTTGTAAGCGAGTTTAGTCCTGCCCAGCATTCAGTTGTGCGCGCACTGGATAGACTTGTTGATGACGAGCAATTGGCTGAACTAGTTGCTGCTCATGGTGCCATTATTCCTCTTGTTGGTCTTCTGTATGGTAGGAATTATTTGCTCCATGAGGCCATTTCTAGAGCTCTGGTTAAGCTAGGGAAAGACAGACCTTCTTGTAAAATGGAAATGGTCAAAGCTGGAGTTTTTGAAAGTATACTGGACATTCTCCATGAAGCACCTGATTATCTGTGTGCAGCATTTGCAGAATTGCTGCGTATATTGACCAATAATGCCAGCATAGCTAAAGGGCAGTCTGCTTCTAAAGTGGTTGAGCTCCTATTTATGTTGCTGACGAGACAAGAATTTGGGCCTGATGGACAGCACCGCGCGTTGCAGGTTTTGGTTAATATCTTGGAACATCCACAATGTCGTGCTGACTATACATTGACATCCCACCAAGCTATTGAACCACTTATCCCCTTGCTCGATTCTCCAATACCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTGCTTTTGGAAGAACACCTTCAGAAGGATCCAGCTACACAGCAGGTTGTATTGGATCTGATAGCTGCTATTGAAAAGGATTTATGGGCTACTGGAAATGTGAATGATGAGTATCTGAGAGCCTTGAATGCTCTTTTTAGCAACTTCCCACGACTAAGAGCAACTGAGCCGGCAACACTTAGCATTCCCCATCTGGTTACATCACTAAAGACGGGCTCAGAGGCCACCCAAGAAGCTGCCTTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTCTCAAGAGCTCAGTCAATAGCAGCTGCAGATGCTATTCCTTTACTACAGTACTTAATCCAGTCTGGTCCTCCTCGGTTTCAAGAGAAGGCTGAATTTTTATTGCAGTGTTTACCTGGCACATTAGTTGTCATCATAAAACGCGGTAACAACATGAAGCAGTCAGTTGGAAACCCAAGTGTTTACTGTTTTGATTACAATGGTGTCACTAGACTAGATGTAGATCCAAGTAATGCACTAGGATTTGTTGTGCTGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTTCTTGGTCCTTTGAGAGCCCTCCGAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTTCATTTGGGAAAGTGACGATCCAAATTGATCGCGTGGTAATGCTTGGATCTGTCGCTGGAGAATACACTCTACTGCCACAAAGTAAAAGTGGCCCCTCGAGGAATTTAGAGATAGAATTCCAGTGGTCTAACAAGACAAGTGATGCCTGTTAG | 5709 | 0.4423 | MSVVLWSDGYNCESAQSELNMTTTVAWRFGSNNGGGLAANDMERNGEGNIPDSEPPTPHSVLKMGLRERSSGMEDPDGTLASVAQCIEQLRQSSSSAQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLSVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGRLKSSSAEGQVAAAKTIYAVSQGGSKDHVGSKIFSTEGVVPALWAQLQKGLKTGNVVDGLLTGALKNLSSNTEGFWNATIQAGGVDILMKLLTTGHPSTLANVCFLLASMMMEDASVCSKLLTSEATKQLLKLLGPGNDAPIRAEAAGALKSLSSQCKEARREIANSNGIPALINATIAPSKEFMQGEHAQALQENAMCALANISGGLSYVISSLGQSLESCSSATQISDTLGALASALMIYDKKDEATRTSDPLVVEQTLLEQFKSHSRFLVKERTIEALASLYGNPVLSIKLVNSYAKHLLVGLITMAVNEVQDDLIRALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSTKAKEDSAKILTNLCNHSEDIRACVESANAVPALLWLLKNGSSNGKEIAAKTLNHLIHKSDTTTISQLTALLTSDLPESKVYVLDALRSMLSVAPLSDIQREGSAASDAIDTMIKLMSSTNEETQAKSASALRCWLDLVSGIFELRKDVRESSVAVKALLSAMKLLNIEFEGILIESSRCLAAIFLSIKENKDIAAVGRDALLPLVALANSSTLEVAELATCAVANLILDSEISEKAVAKEIIIPATRVLREGTISGKTHAASAIGRLIHSRQVDYSITECVNRAGTVLALVSFLDSAINGSVSTSEAIEALAVLSRLEPSSAHVKPAWAVLAEFPESINPIVLSIADSTPVFQDKAIEILCQLCRDQPVVLGNNVVAASGCLCSLAKRVIGTKNVKVKIGGAALLICAAKVNHRRLMEELNQTNLSVDLIQSLVGMLSSTSPLSNQGEENKEFISIIIQRKEDANDGKSNTHTAIVSDSNLAIWLLSILACHDEKCKIAIMEAGAIDIFTERISDCYSQYTQIDYKEDSSMWICALLLAVLFQDRDIIRAHATMKSVPAVASLLKSEELANRYFAAQSIASLVCNGSRGTLLSVANSGAASGLISLLGCADIDIQDLLDLSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEALTKYLSLGPQDATEEAATDLLGILFDSAEIRRHEAAFGAVTQLVAVLRLGGRGARYSAARALENLFSADQIRNAETARQAVQPLVEILNTGLEKEQHAAIATLVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSLDLKGDAAELCCVLFGNTRIRSSVAAARCVEPLVSLLVSEFSPAQHSVVRALDRLVDDEQLAELVAAHGAIIPLVGLLYGRNYLLHEAISRALVKLGKDRPSCKMEMVKAGVFESILDILHEAPDYLCAAFAELLRILTNNASIAKGQSASKVVELLFMLLTRQEFGPDGQHRALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPIPAVQQLAAELLSHLLLEEHLQKDPATQQVVLDLIAAIEKDLWATGNVNDEYLRALNALFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCFDYNGVTRLDVDPSNALGFVVLVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSSFGKVTIQIDRVVMLGSVAGEYTLLPQSKSGPSRNLEIEFQWSNKTSDAC | 1902 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele22g1409 | 1902 | SUPERFAMILY | ARM repeat | 85 | 285 | IPR016024 | - | |
| Lele22g1409 | 1902 | Pfam | C2 domain | 1814 | 1866 | IPR000008 | - | |
| Lele22g1409 | 1902 | Gene3D | - | 623 | 845 | IPR011989 | - | |
| Lele22g1409 | 1902 | Gene3D | - | 73 | 427 | IPR011989 | - | |
| Lele22g1409 | 1902 | SUPERFAMILY | ARM repeat | 636 | 1008 | IPR016024 | - | |
| Lele22g1409 | 1902 | Coils | Coil | 317 | 344 | - | - | |
| Lele22g1409 | 1902 | SUPERFAMILY | ARM repeat | 514 | 709 | IPR016024 | - | |
| Lele22g1409 | 1902 | SUPERFAMILY | ARM repeat | 238 | 571 | IPR016024 | - | |
| Lele22g1409 | 1902 | Gene3D | - | 1426 | 1545 | IPR011989 | - | |
| Lele22g1409 | 1902 | FunFam | Protein CELLULOSE SYNTHASE INTERACTIVE 1 | 1406 | 1640 | - | - | |
| Lele22g1409 | 1902 | SUPERFAMILY | ARM repeat | 1212 | 1533 | IPR016024 | - | |
| Lele22g1409 | 1902 | SUPERFAMILY | ARM repeat | 1429 | 1765 | IPR016024 | - | |
| Lele22g1409 | 1902 | SUPERFAMILY | ARM repeat | 964 | 1185 | IPR016024 | - | |
| Lele22g1409 | 1902 | Pfam | Armadillo/beta-catenin-like repeat | 124 | 154 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | Pfam | Armadillo/beta-catenin-like repeat | 545 | 584 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | Gene3D | - | 1203 | 1425 | IPR011989 | - | |
| Lele22g1409 | 1902 | Gene3D | C2 domain | 1812 | 1899 | IPR035892 | - | |
| Lele22g1409 | 1902 | CDD | C2 | 1769 | 1868 | - | - | |
| Lele22g1409 | 1902 | PANTHER | PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 | 1650 | 1897 | IPR044297 | GO:0008017|GO:0010330|GO:0051211|GO:2001006 | |
| Lele22g1409 | 1902 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 556 | 598 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 1766 | 1895 | IPR035892 | - | |
| Lele22g1409 | 1902 | Gene3D | - | 846 | 1194 | IPR011989 | - | |
| Lele22g1409 | 1902 | Gene3D | - | 1549 | 1766 | IPR011989 | - | |
| Lele22g1409 | 1902 | SMART | arm_5 | 799 | 839 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 114 | 155 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 331 | 380 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 844 | 886 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 1424 | 1464 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 587 | 627 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 1507 | 1547 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 1337 | 1378 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 759 | 798 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 1465 | 1505 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 288 | 329 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 156 | 196 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 1255 | 1296 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 1592 | 1633 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 545 | 585 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 245 | 286 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | SMART | arm_5 | 1210 | 1253 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 1222 | 1266 | IPR000225 | GO:0005515 | |
| Lele22g1409 | 1902 | Gene3D | - | 473 | 622 | IPR011989 | - | |
| Lele22g1409 | 1902 | ProSiteProfiles | C2 domain profile. | 1748 | 1874 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele22g1409 | Lele-ChrLele22 | 19898161 | 19913557 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele22g1409 | 508 | 640 | U-box Gene Family | AT2G23140 | 39.259 | 1.26e-10 | 64.7 |