Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1395 ATGAGTCGAGTGCAGTGCAGGGGAACCAAAAGCAGAGGGAAAGACAAAAACAGTCCATCAAGTGGTGGTCAGAATGTGGTGGTCTCTGACGCCAATTCCAGAATCAACCTTGCTTTCACAGCCGCCATCTCCAACTCCTTTATTTTCACCTCCGCCCCTCCCCGCGGCGGCGCCGGCTTCATCTCCATCTCAAGGAAGAATAAGAAGTTCTTGAAGACCCTCGACATCAATGGAGCCGCCAAAATCAATTCCTGGCTTCAGCACCCATCTGCATTAGATATGTTTGAGCAAATTATCGAGGCTTCCAGAGGAAAGCAAATAGTCGTGTTTCTCGACTACGACGGCACGCTCTCCCCCATCGTCGACGACCCTGACAGCGCTTTCATGTCCGATGCGATGAGGAAGACGGTGAGAAACCTGGCGAGGTGTTTTCCGACTGCTATAGTAAGCGGAAGATGCAGAGACAAGGTGTACAACTTTGTTCGCTTGGCAGAGCTATATTATGCAGGAAGCCATGGAATGGACATTAAAGGCCCGACTAAAATCTCTAAATACAATAGAGACAGCAAAGCGATTCTGTTTCAGCCTGCTTGTGAATTTTTACCCATGATAGACAAGGTTTATCAACTGTTAGTTAAGAAAACAAGCTCAACCCCAGGAGCTAAGGTGGAGAACAACAAGTTCTGTGTATCTGTTCATTTTCGATGTGTTGATGAAAAGAAATGGAGAGAGCTGGCGAACCAAGTTAGATCCGTGTTGAAGGAGTATCCAAAGCTTCGTCTTACTCAAGGAAGAAAGGTACTTGAGATTCGTCCCCCGATTAAATGGGACAAAGGAGAAGCCCTGGAATTTTTGTTAGAGTCACTTGGTTTTGCCAACTGTAGCGACGTGTTCCCTGTTTATATTGGCGACGATCGATCCGATGAAGATGCATTCAAGGTGATGGATTTTCTTCAGCGATTAGTGGAGTGGAAGAGGGTTTCGGTGAGGGCACGTACCAGGGTGTAA 1008 0.4712 MSRVQCRGTKSRGKDKNSPSSGGQNVVVSDANSRINLAFTAAISNSFIFTSAPPRGGAGFISISRKNKKFLKTLDINGAAKINSWLQHPSALDMFEQIIEASRGKQIVVFLDYDGTLSPIVDDPDSAFMSDAMRKTVRNLARCFPTAIVSGRCRDKVYNFVRLAELYYAGSHGMDIKGPTKISKYNRDSKAILFQPACEFLPMIDKVYQLLVKKTSSTPGAKVENNKFCVSVHFRCVDEKKWRELANQVRSVLKEYPKLRLTQGRKVLEIRPPIKWDKGEALEFLLESLGFANCSDVFPVYIGDDRSDEDAFKVMDFLQRLVEWKRVSVRARTRV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1395 335 FunFam Trehalose 6-phosphate phosphatase 197 273 - -
Lele22g1395 335 Pfam Trehalose-phosphatase 110 319 IPR003337 GO:0003824|GO:0005992
Lele22g1395 335 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 78 315 IPR044651 GO:0004805|GO:0005992
Lele22g1395 335 SUPERFAMILY HAD-like 108 317 IPR036412 -
Lele22g1395 335 Gene3D - 189 273 - -
Lele22g1395 335 TIGRFAM T6PP: trehalose-phosphatase 105 317 IPR003337 GO:0003824|GO:0005992
Lele22g1395 335 FunFam Trehalose 6-phosphate phosphatase 107 192 - -
Lele22g1395 335 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 109 317 IPR006379 -
Lele22g1395 335 CDD HAD_TPP 108 316 - -
Lele22g1395 335 Gene3D - 109 315 IPR023214 -
Lele22g1395 335 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1395 Lele-ChrLele22 19742911 19745912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1395 96 313 Trehalose Biosynthesis Gene Families AT1G70290 28.696 9.32e-11 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1395 22 19742911 19745912 Lele23g0612 23 4634421 4639453 hybridization
Lele22g1395 22 19742911 19745912 Lele24g1350 24 19541524 19546121 hybridization