Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1377 ATGTATTCATGCAATCGTTGCCACAAGAAGAATTTCTCGGTTCTTTCAGATTTAAAGAGCCATTTGAAGCATTGTGGTGAGTCATCAAAGTGGAAATGCTCATGTGGGACCACATTTTCAAGGAAGGATAAATTGTTTGGCCACATAGCTCTGTTTGATGGGCATATGCCAGCTCTTGCTGGGGATGAAGAAGAGGAAGGGAAGCAAATGGTAAAGGAGCATGATGATGAAGATATGAATATGATGTTTAAGGAAGAAGATTCAGGGCAAAATTATTTGAATGGGGATTTACCAGAAGGATTCTTTGACGATTTAGATGAATTTGGCAACTATCCTTTGGATGAAGCTCTGGGCTTTCTCTAA 363 0.3967 MYSCNRCHKKNFSVLSDLKSHLKHCGESSKWKCSCGTTFSRKDKLFGHIALFDGHMPALAGDEEEEGKQMVKEHDDEDMNMMFKEEDSGQNYLNGDLPEGFFDDLDEFGNYPLDEALGFL 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1377 120 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 1 90 IPR044300 GO:0010044|GO:0010447
Lele22g1377 120 Gene3D Classic Zinc Finger 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1377 Lele-ChrLele22 19562427 19562789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1377 2 63 C2H2 Transcription Factor Family AT1G34370 69.355 2.25e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele22g1377 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1377 22 19562427 19562789 Lele23g0629 23 4811773 4812900 hybridization