Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1368 ATGTCAAAAAAGAGCCGTCTGCCTGCAGTAATGGATGAGGAAGAACATGAGGTGTACGGAGGCGACATCCCAGACATGGGCGAGATGGAAGGAGATTTGGATTCGCGCCATGCCGATGTCGATATGTCTGCTGCTGACGACGACGCCGTCAAGGAGCTGGACGAGATGAAGAAAAGATTGAAGGAAATGGAGGAGGAAGCCGCAGCTCTCCGTGAAATGCAAGCTAAGGTCGAGAAGGAGATGGGTGCGGTTCAAGATCCTGCCAGCGCAGCTGCTTCTCAAGTAAACAAGGAGGAGGCAGATTCTCGATCTGTTTTTGTTGGCAATGTAGAATGTGCTAAAGATGCGTTGGAGGAGATGGCTTATGGTTCATCGGAAGATCATTCTGCAACTGCTGGGGATGCAATCTCTAGTCATAGAGCCCTGCTGCTGACTGAAAAGGTCTATGGTACATTTGTTGTGTGCCATTTAGCTGACATGCCAAGGGTTGATTATGCATGCACACCAGAAGAAATGCAGCACCACTTCCAGTCATGTGGGACAGTGAATAGGGTGACTATCCTTACAGACAAGTTTGGTCATCCAAAAGGTTTTGCTTATGTGGAATTCCTTGAACCTGAGGCTGTTCAAGAGGCTCTGGTCTTGAATGAATCTGAATTACATGGTCGTCAATTGAAGGCATGTCTTGTTATGCCAAAGAGGACCAATGTCCCTGGAATGAAACAGTATCGCCCCAGGCGTTTCAATCCTTATGCGGGGTATCGCTTCCGGAGGCCCTTCCCTTCTCCTTACTTTTACTCACCTTATGGATATGGGAAGGTTCCCAGGTTCAGAAGGCCAAGTCGTTACATGCCATATTATTAG 864 0.4815 MSKKSRLPAVMDEEEHEVYGGDIPDMGEMEGDLDSRHADVDMSAADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPASAAASQVNKEEADSRSVFVGNVECAKDALEEMAYGSSEDHSATAGDAISSHRALLLTEKVYGTFVVCHLADMPRVDYACTPEEMQHHFQSCGTVNRVTILTDKFGHPKGFAYVEFLEPEAVQEALVLNESELHGRQLKACLVMPKRTNVPGMKQYRPRRFNPYAGYRFRRPFPSPYFYSPYGYGKVPRFRRPSRYMPYY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1368 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 226 IPR000504 GO:0003723
Lele22g1368 287 SUPERFAMILY RNA-binding domain, RBD 163 258 IPR035979 GO:0003676
Lele22g1368 287 SMART rrm1_1 154 228 IPR000504 GO:0003723
Lele22g1368 287 MobiDBLite consensus disorder prediction 1 33 - -
Lele22g1368 287 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 34 247 - -
Lele22g1368 287 CDD RRM_II_PABPs 163 226 - -
Lele22g1368 287 Coils Coil 46 80 - -
Lele22g1368 287 Gene3D - 31 238 IPR012677 -
Lele22g1368 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 232 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1368 Lele-ChrLele22 19498358 19503963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1368 160 233 Eukaryotic Initiation Factors Gene Family AT2G36660 32.000 1.42e-07 50.4