Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1358 ATGAAGAGATCCCTCGAAAGCTCCGATTCTTTGGGTGCTTTGATCACTATGTGTCCTCCATCCACAGATGAACACAGTCCGAGGAACAATACTAATAATCATGTGTATGGGAGGGAGTTCCAAGCCATGATGTTGGATGGATTAGACGAGGATGGTTGTGTGGAAGAATCGAGCCATTTAATGATGTCGGAGAAGAAACGGCGTCTGAGTGTTGATCAAGTTAAGGCTTTAGAGAAGAACTTCGAGGTCGAAAACAAGCTTGAACCTGAGAGGAAAGTGAAGCTTGCTCAAGAACTTGGATTACAACCTCGGCAAGTCGCAGTTTGGTTCCAAAACCGTCGTGCACGGTGGAAAACGAAGCAGTTAGAGAGAGATTACGGCGTTCTCAAAGCAAATTATGATGCCCTCAAAGTTAACTTCGACACCCTCCAACAGGACAACGAAGCATTGCTCAAAGAGATTAAGGAATTGAAATCGGGACTAAACGAGGAGCAGACAGAGAGTGATATTTCAGTTAAGGAGGAGATAACGACGGGGTCTGATTCCGAAGAGAAAAAGCTTGAACGGAGCGACCCACCACAGGTTGAAACCTCCATTATTCTGGAATCAGAGTGCAAGGACTTGAATTATGGGTGCTTCAATGGAGTTGGAGGAGGAGGTGGTGGGGGTGTTGCTTCACTGATAGCACCGGTGGATCATTTCAAAGACGGTGCTTCTGATAGCGACTCAAGCGCAATCTTGAACGAAGATAATAACAGCCCCAACGCTGCCATTTCGTCGCCGGCTGGTCTTCATCGTCAGGGCCACCAACACCAACACCCCCTTTTGATGTCTCCGACGACGTCGTCGTCCATGAACTGCTTTCAGTTCCAGAAAACAACATACCAGAGTCAGTATGTTAAGATGGAAGAACACAACTTCTTCAGCGCCGAAGAAGCCTGCAATTTCTTCTCCGAAGAACAAGCACCCACCCTCCATTGGTACTGTTCTGATAATCACTGGAGTTAA 1008 0.4692 MKRSLESSDSLGALITMCPPSTDEHSPRNNTNNHVYGREFQAMMLDGLDEDGCVEESSHLMMSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKVNFDTLQQDNEALLKEIKELKSGLNEEQTESDISVKEEITTGSDSEEKKLERSDPPQVETSIILESECKDLNYGCFNGVGGGGGGGVASLIAPVDHFKDGASDSDSSAILNEDNNSPNAAISSPAGLHRQGHQHQHPLLMSPTTSSSMNCFQFQKTTYQSQYVKMEEHNFFSAEEACNFFSEEQAPTLHWYCSDNHWS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1358 335 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Lele22g1358 335 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Lele22g1358 335 MobiDBLite consensus disorder prediction 1 33 - -
Lele22g1358 335 MobiDBLite consensus disorder prediction 162 196 - -
Lele22g1358 335 MobiDBLite consensus disorder prediction 241 260 - -
Lele22g1358 335 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 307 IPR045224 GO:0003700
Lele22g1358 335 MobiDBLite consensus disorder prediction 162 192 - -
Lele22g1358 335 SUPERFAMILY Homeodomain-like 58 122 IPR009057 -
Lele22g1358 335 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Lele22g1358 335 Coils Coil 133 167 - -
Lele22g1358 335 MobiDBLite consensus disorder prediction 238 278 - -
Lele22g1358 335 Pfam Homeobox associated leucine zipper 120 160 IPR003106 GO:0006355|GO:0043565
Lele22g1358 335 Gene3D - 62 127 - -
Lele22g1358 335 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Lele22g1358 335 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Lele22g1358 335 SMART HOX_1 63 124 IPR001356 GO:0003677
Lele22g1358 335 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Lele22g1358 335 CDD homeodomain 65 121 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1358 Lele-ChrLele22 19389722 19391029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1358 1 335 Homeobox Transcription Factor Family AT4G40060 46.939 4.62e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele22g1358 Homeodomain 2.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1358 22 19389722 19391029 Lele22g1358 22 19389722 19391029 ECH
Lele21g1368 21 22138051 22139362 Lele22g1358 22 19389722 19391029 ECH
Lele22g1358 22 19389722 19391029 Lele23g0654 23 5029173 5030474 hybridization
Lele22g1358 22 19389722 19391029 Lele24g1316 24 19180277 19181589 hybridization