Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1357 ATGAAGAAAGTCTATCGACCCCTTCACCACACGGGTTTCCCGCGAAACCCAGAATTCCATCGAAATTCTTTCCATCCCTCCAATTTTCGTCCCCGCTGGAAACCAGAATTTCGCCCCAATCAACGCCTGGACCGTCCACCGGAAAACTTTTCTCATGCCCGTAGACCTAATTTCGTCGTGCTGCTTCGCTCTGACTGCCGCAATTTCACCAGGGCGGATGTTGAGGGCTTGATAGCAAAATGTAAGTACAAGCCCGAAAGTTCCAGTGTTTTCCCAGGTGATCATGTTGCCGCCCGCCTAAATTTTTTTCAGTGGTGCGACGCGCTCGAGGCCTTTGTTTTCTTTTGGGAGTTTTGCCTCAATGTTCATAACTTTATTCCGGAGCTCATATCGCATGTTCTCGTACCTTCCGACATGGACGAGCTGCGTGACCGACTTCGGGCCCTTTTCGCTAGTCATGTGAAGGGCTTAATGGAAGGAAAGGAAGTGAAGAGATGGCGTGAGGAAAGCGAGCGTGCCTCGACGGAACTTGCGCATTTAACATTTTTACTCAAGAGGCCGCAGTCATTAGGCTTGTTGGGCGAGCTCCGAGAAAAGAGAAAAGGGCTAGGTTCTGAGAAAAAGTTGATTGAAAGGAGAATAAAGGAGTTTCTGTCCGCCATGGAGTGTATATTGCGGCATCTCGAGGACAGCAAGGGGGATGAGGATGGTATCTCTGTTTTCCGAAACTTGAAGTTTGATGAAACTTGGGATTGGAGGCGTATACATAGGTTGATAATGAGGGAGCGTCGCAGACTTGAGGAGGGATTGCCCATTTATGCTTACCGAAGAGATATTCTTAAGGAAATACATTCTCAACAGATAATGGTCTTAGTTGGAGAGACTGGCTCTGGTAAGAGTACGCAGTTGGTACAGTTTCTTGTTGATTCAGGCATTGGTGCTAATGCATCCATTATTTGCACTCAGCCTCGGAAGATTGCTGCCAGGTCATTGGCCCTGAGGGTACAAGAAGAAAGTAGTGGATGCTATGAAGACAATCCAATCAAGTTTTATCCAACATTTTCATCCTCAAATGAGTTCAATTCTGGAATAATATTTATGACAGACAACTGTCTATTGCAGCAGTACATGAGTGATGATAATTTGTCTGGGATCTCATGCCTCATAATTGATGAGGCTCATGAAAGGAGCCTAAATACAGATCTAATGTTGGCATTGATAAAAAGTTTGCTCTGTAGGAATGTTGAAATGCGGCTTATCATTATGTCTGCTACTGCTGATGCAAAGCAACTATCTGATTACTTTTATGGTTGCCGAATATTTGATGTGGTAGGGAGAAACTTTCCAGTTGATGTGAGATATGTTCCGTCTGCTTATGCAGGACGATCTGGTCCTACCATTGTTGCTTCATATGTTTCTGATGTAGTGAGAATTGCAACTGAAGTTCACAGAACAGAGAAAGAGGGAACAATTCTTGCCTTTTTGACCTCACAGATGGAGGTAGAATGGGCTTGTGAAAAGCTTGAAGCTCTCAAAGCTGTAGCTTTGCCCTTACATGGCAAGCTTTCGCCTGAAGAGCAGTTATGCGTTTTCCAGAATGTCCCTGGAAAAAGGAAGGTGATATTTGCAACTAATCTTGCGGAGACGTCACTTACAATTCCTGGTGTCAAGTATGTCATAGATCCTGGGTTTGTTAAAGATAGTCGATATGAACCTGGCAGTGGAATGAATGTACTTAAAGTTTGCTGGATCAGCCAAAGCTCTGCTAATCAACGGGCTGGTCGTGCTGGGAGGACCGAGCCTGGTAGATGTTATAGACTCTACTCAGAATTTGACTATAATTCTATGGCTCCAAATCAAGAACCTGAGATTCGACGAGTTCATCTTGGTGTAGCAGTGTTGAGGATACTTGCCTTGGGAGTGAAGAATGTGCAGGATTTTGACTTTGTTGATGCTCCAAGTCCTAGTTCTATTGATATGGCAATGAGGAATCTAATTCAATTAGGAGCAATTAGATTGAACAATAATAATTATGAATTAACTGAAGAAGGCAGGTACTTGGTAAAAATGGGTGTTGAGCCTAGGCTTGGTAAACTTATTCTTGGCTGTTACCAGTATGGTTTGGTCAAAGAAGGTCTTACTCTTGCAGCAGTGATGGCCAATGCCAGTAGCATCTTTTGTAGAGTAGGAAATGAAGATGATAAACAGAGATGTGATTGTCGTAAGGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTTTATCTGTATACAAGGAATGGGAAGCTTTGCCCCGAGAGAGGAAAAACAAATGGTGTTGGGAAAACAGTATTAATGCCAAGTCCATGAGGAGATGCCAAGACACCATTAAGGATTTGGAATCTTGCCTTGAGTATGAACTTGATGTTGTTGTTCCGAGCTACTGGCGTTGGGATCCTTACAACTCTTCTGATTGTGATAAGTATCTAAAAATGGCTATACTGTCCTCACTTTCTGAGAATGTAGCCATGTACTCTGGATGCCGTCAACTTGGTTATGAAGTAGCTCTAACTGGGCAGCTTGTTCAACTGCATCCATCTTGTTCATTGCTAGTATTCACTAAGAAACCTAGCTGGGTTGTTTTTGGTGAGATACTCTCTGCTTCGAGTCAATATTTGGTCTGTGTGAGTTCTTTTGACTTGGAATCATTGTGCACCATTGACCCTCCTCCATTGTTTGATGTATTTTGGATGGAAAGAAAGAAGTTGCAAATGAAGATGTGGACTGGTCTTGGCTGTATTCTTCTCAAAAGATTTTGTGGGAAAGGAAACTGTAATCTGCTTGGTCTTGTGTCAAGCATAAGAACAACATGCATGAATGAACGTATCTTCGTTGAAGTTAATGTTGACCAGAATGAAATTCAGCTTTATGCCTCCTCAAGTGACATGGAATTGGCCATTGCAATGGTTAATGAAGCTCTGGAATATGAGAGAAAATGGTTGCGTACTAAATGCTTGGAGAAATGTTTGTATCATGGGTCTGGGGTCTCATCTCCAGTAGCTCTGTTTGGATCTGGTGCTGAGATAAAGCACTTGGAAGTTGAAAACCGGTGCTTGAGTGTGGATGTATGTCATCCAAATATAAGTGCATTTAACGATAAGGATCTTTTGATGTTCCTTGAAAAGAATTCCTTAGGTTGTATCTGTGCTGTGCACAAGTTTACAAATGTTGTGCAGGATGTTGAAGATAGAGAGAAATGGGGCAGGATATCGTTTCTCTCCCCTGATGCGGCCAAAAGAGCTACTGAGCTAGATGGAGAAGAGTTTCATGGTTCATCCTTAAAAATAGTTCATTCACAGGCAACTAGTGGAGGGGATAAAACATTTTCATTCCCTGCTGTTAAAGCTAAATTATGTTGGCCTCGTAGAATTAGCAAGGGATTTGGCATTCTTAAATGTGAAATGAAGGATGTTAATTTAATCTTGAAAGATTTCTATAACCTTGAAATAGGAGGGTGGTATGTTCGTTGTGAACCTGGCAGAAGGAGCTTGGATAGTATTGTGATTAATGGACTTCGTAAGGAACTCTCAGAAGCTGAAATTTTAGATGTACTAAGAACTGCTACAAGTAGGAGGATTGTGGATTTTTTCTTGGTGAGAGGAGATGGGGTTGGGAATCCCCCATGCAATGTTTGTGAGGAGGCGCTCCTAAAAGAAATTTCTCCCTTTATGCCTAAAAGGCACCCCCACACTTCTTCTTGCTGTGTTCAGGTGTATCCACCTGAGCAAAAGGATTCCTTCATAAGAGCTTTGATCACTTTTGATGGAAGATTACATTTGGAGGCAGCAAAGGCTTTGGAGCAAATTGAAGGGAAAGTATTGCCTGGTTGTCTTTCTTGGCAGAAGATAAAGTGCCAGCAGTTGTTTCATAGCTCATTGACATTCCCTTTTCCTGTTTATCGTGTGATTAAGGAACCACTGGATAAGTTACTTGCTAGCTTCAGCTGTATACAGGGTCTTGAGTGGAACCTAGAAATGACTGTTAATGGTTCCTACCGTATAAAAATAACAGCTAATGCCACAAAGACAGTGGCAGTGGTTAGGAGACATCTTGAAGAACTCACAAGGGGGAAAACCATTGTCCACAAGGGTCTCTCCCCTCCGGTTCTTCAACTGCTATTTTCCAGAGATGGAATTAATCTTAAAAGCTCAGTACAGCAAGAGACAGAAACACACATTCTTTTTGACCGGCACAACCTGACTTTGCGGGTATTTGGTTCCCCAGAGAAGGTTGAGTTGGCCCAGCAGAAGCTAATTGAGTCTTTACTCACTCTTCATGAAAGGAAGCAGTTAAAAGTCCACCTCCGAGGGAGAGATTTACCTGCTGATTTGATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTCCATGGGCTGAAAGAGAAGATACCAGAGGCAGACTTTACTCTCAACACTCGTCGCCAGATAATCTATCTTCATGGTAAAATGGAGCTGAAGCCAAAAGTAGAGGACTTAATACATGAGATTGCTTGTTCAAGTAATCATTCGGCCGAGAGACTTGGGACTGGACTGGACTGCCCAATTTGCCTGTGTGAGGTGGAGGATGGTTATCAGCTTGAAAACTGCGGCCATTTGTTCTGTCGGATGTGCCTGGTGGAGCAATGCGAATCTGCTATAAGAAACCAAGGAGGTTTCCCAATATGCTGCACGCATGCGGGCTGTGGGGATCCCATTCTGCTTGTAGATTTGACAGCTCTTTTATCTAACGATAAGTTAGAGGAACTTTTCAGAGCCTCTTTGGGAGCTTTTGTAGCTTCAAGTGAGGGCAAATACAGGTTCTGCCCATCTCCCGATTGCCCCTCCATTTATCGAGTCGCTAGTCCCGATGCAGCCAGTGAGCCATTCGTTTGTGGAGCATGTTATGCCGAGACATGTACAAGGTGTCACTTGGAGTATCATCCATACATTTCATGTGAGAGATACAAGGAGTTCAAGGAAGATCCAGATTCATCTCTCAAGCAGTGGTGCAAGGGCAAAGCACATGTCAAAGCCTGCCCTGCTTGTGGCTATACAATTGAGAAGTTAGATGGCTGCAACCACATTGCATGCAAGTGTGGTAAACATGTCTGCTGGGTTTGCCTGGAGTTCTTTGGAACTAGTGATGATTGTTATAACCATTTGAGAACTGTACACATGGCTATCATATAA 5211 0.4322 MKKVYRPLHHTGFPRNPEFHRNSFHPSNFRPRWKPEFRPNQRLDRPPENFSHARRPNFVVLLRSDCRNFTRADVEGLIAKCKYKPESSSVFPGDHVAARLNFFQWCDALEAFVFFWEFCLNVHNFIPELISHVLVPSDMDELRDRLRALFASHVKGLMEGKEVKRWREESERASTELAHLTFLLKRPQSLGLLGELREKRKGLGSEKKLIERRIKEFLSAMECILRHLEDSKGDEDGISVFRNLKFDETWDWRRIHRLIMRERRRLEEGLPIYAYRRDILKEIHSQQIMVLVGETGSGKSTQLVQFLVDSGIGANASIICTQPRKIAARSLALRVQEESSGCYEDNPIKFYPTFSSSNEFNSGIIFMTDNCLLQQYMSDDNLSGISCLIIDEAHERSLNTDLMLALIKSLLCRNVEMRLIIMSATADAKQLSDYFYGCRIFDVVGRNFPVDVRYVPSAYAGRSGPTIVASYVSDVVRIATEVHRTEKEGTILAFLTSQMEVEWACEKLEALKAVALPLHGKLSPEEQLCVFQNVPGKRKVIFATNLAETSLTIPGVKYVIDPGFVKDSRYEPGSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEFDYNSMAPNQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSPSSIDMAMRNLIQLGAIRLNNNNYELTEEGRYLVKMGVEPRLGKLILGCYQYGLVKEGLTLAAVMANASSIFCRVGNEDDKQRCDCRKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINAKSMRRCQDTIKDLESCLEYELDVVVPSYWRWDPYNSSDCDKYLKMAILSSLSENVAMYSGCRQLGYEVALTGQLVQLHPSCSLLVFTKKPSWVVFGEILSASSQYLVCVSSFDLESLCTIDPPPLFDVFWMERKKLQMKMWTGLGCILLKRFCGKGNCNLLGLVSSIRTTCMNERIFVEVNVDQNEIQLYASSSDMELAIAMVNEALEYERKWLRTKCLEKCLYHGSGVSSPVALFGSGAEIKHLEVENRCLSVDVCHPNISAFNDKDLLMFLEKNSLGCICAVHKFTNVVQDVEDREKWGRISFLSPDAAKRATELDGEEFHGSSLKIVHSQATSGGDKTFSFPAVKAKLCWPRRISKGFGILKCEMKDVNLILKDFYNLEIGGWYVRCEPGRRSLDSIVINGLRKELSEAEILDVLRTATSRRIVDFFLVRGDGVGNPPCNVCEEALLKEISPFMPKRHPHTSSCCVQVYPPEQKDSFIRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSLTFPFPVYRVIKEPLDKLLASFSCIQGLEWNLEMTVNGSYRIKITANATKTVAVVRRHLEELTRGKTIVHKGLSPPVLQLLFSRDGINLKSSVQQETETHILFDRHNLTLRVFGSPEKVELAQQKLIESLLTLHERKQLKVHLRGRDLPADLMKQVVKNFGPDLHGLKEKIPEADFTLNTRRQIIYLHGKMELKPKVEDLIHEIACSSNHSAERLGTGLDCPICLCEVEDGYQLENCGHLFCRMCLVEQCESAIRNQGGFPICCTHAGCGDPILLVDLTALLSNDKLEELFRASLGAFVASSEGKYRFCPSPDCPSIYRVASPDAASEPFVCGACYAETCTRCHLEYHPYISCERYKEFKEDPDSSLKQWCKGKAHVKACPACGYTIEKLDGCNHIACKCGKHVCWVCLEFFGTSDDCYNHLRTVHMAII 1736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1357 1736 ProSitePatterns Zinc finger C2H2 type domain signature. 1711 1732 IPR013087 -
Lele22g1357 1736 Gene3D - 250 446 IPR027417 -
Lele22g1357 1736 SMART ultradead3 268 453 IPR014001 -
Lele22g1357 1736 ProSiteProfiles Zinc finger RING-type profile. 1527 1569 IPR001841 -
Lele22g1357 1736 Gene3D - 644 749 - -
Lele22g1357 1736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 280 444 IPR014001 -
Lele22g1357 1736 SMART helicmild6 502 600 IPR001650 -
Lele22g1357 1736 CDD DEXHc_RHA-like 287 443 - -
Lele22g1357 1736 SUPERFAMILY RING/U-box 1680 1729 - -
Lele22g1357 1736 PANTHER ATP-DEPENDENT RNA HELICASE 262 906 - -
Lele22g1357 1736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1523 1603 IPR013083 -
Lele22g1357 1736 Gene3D - 1655 1734 - -
Lele22g1357 1736 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 253 446 - -
Lele22g1357 1736 CDD SF2_C_RHA 448 608 - -
Lele22g1357 1736 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1655 1733 - -
Lele22g1357 1736 Pfam IBR domain, a half RING-finger domain 1603 1659 IPR002867 -
Lele22g1357 1736 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 447 619 - -
Lele22g1357 1736 SMART ibrneu5 1660 1724 IPR002867 -
Lele22g1357 1736 SMART ibrneu5 1594 1659 IPR002867 -
Lele22g1357 1736 SUPERFAMILY RING/U-box 1609 1665 - -
Lele22g1357 1736 ProSitePatterns Zinc finger RING-type signature. 1543 1552 IPR017907 -
Lele22g1357 1736 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 824 898 IPR011709 -
Lele22g1357 1736 Gene3D - 447 620 IPR027417 -
Lele22g1357 1736 Pfam Helicase associated domain (HA2) 661 755 IPR007502 GO:0004386
Lele22g1357 1736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 474 640 IPR001650 -
Lele22g1357 1736 Pfam Helicase conserved C-terminal domain 482 599 IPR001650 -
Lele22g1357 1736 FunFam RBR-type E3 ubiquitin transferase 643 749 - -
Lele22g1357 1736 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 386 395 IPR002464 -
Lele22g1357 1736 ProSiteProfiles TRIAD supradomain profile. 1523 1731 IPR044066 -
Lele22g1357 1736 SMART ha2_5 660 756 IPR007502 GO:0004386
Lele22g1357 1736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 777 IPR027417 -
Lele22g1357 1736 SUPERFAMILY RING/U-box 1525 1598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1357 Lele-ChrLele22 19357333 19363382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1357 1542 1718 C3H Transcription Factor Family AT2G31770 29.189 1.30e-15 80.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1357 22 19357333 19363382 Lele22g1357 22 19357333 19363382 ECH
Lele22g1357 22 19357333 19363382 Lele23g0655 23 5055611 5062144 hybridization