Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1356 ATGGCTTGTGGAAGAAAATGCAGTCCAATTCCTTCCCCTCTTCAAATCCATGGTAATTCCATGTCCTCTGAAGTTGGTCATGGAGTTGGTCAAATCCATGTTATTCGTGTCGTGATGTTCGCCATAGCTTCCATATTTGGTATGCTTCTTATTCTTTTCGTCGTGCTGAAATTTTTGGGAAGGTACTTTTTGTGGAGATATTATAGCAGGAGAAACAACTCACCGATATTGTTTGACATTCATGGAGATTCTGCGTTCTCCGATGACGATGGACCGCCAATCATTCATCCGATCTGGTTCATCAACACCGTAGGTCTGCAGCAATCCGTTATAGATTCAATCCAAGTCTTCAAATACAGTAAAGACGATGGATTAGTGGAAGGAACAGAGTGTTCTATATGTTTAGGTGAATTTCAAGAAGACGAGAGCCTCCGATTGTTACCTAAGTGCAGTCACGCTTTTCACGTTCAATGCATCGATACGTGGTTGAGATCGCGAAAGAATTGCCCCTTGTGTCGTGCTCCTATAGTTCGTGAAACTTCCGGAAGAGAGGTAAGCGTCGTGATTGCGCCTGAACTCAACTTCGCCGCCGGCGAGATCCATGCGGAGAACTTGGATGGTAGTAGTGGTAGGGTTGTAGACAGTTCTCACGTTGGAGAAGGCGAGAGTAGTAGTCAGTTGAGACTTGAAGAAGAAGATGATTCTGGGATTGTGCCTAATGAAGATGAAGCAGATGGTGAAGTTTCAGATAAAAATTTGGGAAATTCTGAGAAGATGATGAGGGTGAACAGGTCAGTTTCAGTACATTCTTATCCTTCTACCATTGAAGCATCAACACAGGAGCTGAATTCGTATTCTCTACACTCGTTTTAA 873 0.4341 MACGRKCSPIPSPLQIHGNSMSSEVGHGVGQIHVIRVVMFAIASIFGMLLILFVVLKFLGRYFLWRYYSRRNNSPILFDIHGDSAFSDDDGPPIIHPIWFINTVGLQQSVIDSIQVFKYSKDDGLVEGTECSICLGEFQEDESLRLLPKCSHAFHVQCIDTWLRSRKNCPLCRAPIVRETSGREVSVVIAPELNFAAGEIHAENLDGSSGRVVDSSHVGEGESSSQLRLEEEDDSGIVPNEDEADGEVSDKNLGNSEKMMRVNRSVSVHSYPSTIEASTQELNSYSLHSF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1356 290 FunFam RING-H2 finger protein ATL54 106 179 - -
Lele22g1356 290 Pfam Ring finger domain 130 173 IPR001841 -
Lele22g1356 290 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Lele22g1356 290 MobiDBLite consensus disorder prediction 206 258 - -
Lele22g1356 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 181 IPR013083 -
Lele22g1356 290 SMART FANCL_C_2 127 180 - -
Lele22g1356 290 SMART ring_2 131 172 IPR001841 -
Lele22g1356 290 CDD mRING-H2-C3H2C2D_ZSWM2 130 173 - -
Lele22g1356 290 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 40 179 IPR044675 -
Lele22g1356 290 SUPERFAMILY RING/U-box 110 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1356 Lele-ChrLele22 19348294 19349166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1356 88 194 C3H Transcription Factor Family AT4G33565 60.684 6.78e-41 143