Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1334 ATGGCACTTTTATTACTGTTTATGTTCCACTTCTTGCTTCTTCTTCTTGCCCCTACTCTCATTTCTTCTTATCCACTTCAAGATCCAGAACTTGTCTTCCAACAACTTGAGAGAAGCATCAATGCATCCAGGAGAAATCTGGGGTTCGTATCTTGTGGAACAGGCAACCCCATTGATGATTGTTGGAGATGCGATCCCAACTGGCACCGAAATCGCCGGCGTCTCGCCGATTGCGCCATCGGCTTCGGCAGGCACGCCGTCGGAGGAAGAGACGGCCGAACATACGTCGTCACCGACCCCAGCGACAACCCCATGAACCCTAAACCTGGAACTTTAAGATATGGCGTCATCCAAGAAGAACCCTTATGGATAATATTCGAAAGAGACATGAACATCAAGCTCAAAATGGACCTCCTCGTCAATTCCCACAAAACAATCGACGGCCGAGGAGGCACTGTCCACATCGCTGGAGGACCTTGTATCAAAATACAGCGACAGAACAACATCATCATTCATGGCTTGCACATCCACGACTGCGTAAGAGGAAATTCTGGGTTTGTGAGGGTATCACCTCGTCGTTATAGGTTTAGTTCGAGGTCGGACGGCGATGGGGTTTCGATCTCCGGCGCGACGAATGTGTGGGTGGATCATTGCTTCTTGTCAAGATGCTTCGATGGGTTGATCGATGTGGTTCATGGATCAACGGCGGTCACCATTTCGAACAATTACATGACCCACCATGAGAAAGTGATGCTTCTGGGACACAGCGATTCTTATGAGAAGGACCGGAATATGCAGGTCACCGTCGCCTACAATCATTTCGGAGAAGGGCTTGGGGGAAGAATGCCCAGATGCAGGTTTGGGTACTTTCATGTGGTGAACAACGATTACACCCATTGGAAACATTATGCAATAGGAGGGAGCTCGAATCCCACTATTTTCAGCCAAGGCAACAGATTTCTTGCTCCAGATGATGGTGAACACAAAGAGGTGACAAAACATTTTGGGGCATCGCAAAGTGAGTGGAAGAGATGGAATTGGAAGTCGGAAGGAGATATGATGTTGAATGGGGCATTCTTCAGATCATCTGGTGAAGAAGCAGCTTCTTCTGTGTATAGTAAGACTTTGAGTTTGGCGGCAAGACCATCGGAGTTTGTGAGTTCAATGACCTCAGCAGCTGGCCCTCTGAATTGCAGAAGGGTCCCATTCTGGTGA 1215 0.484 MALLLLFMFHFLLLLLAPTLISSYPLQDPELVFQQLERSINASRRNLGFVSCGTGNPIDDCWRCDPNWHRNRRRLADCAIGFGRHAVGGRDGRTYVVTDPSDNPMNPKPGTLRYGVIQEEPLWIIFERDMNIKLKMDLLVNSHKTIDGRGGTVHIAGGPCIKIQRQNNIIIHGLHIHDCVRGNSGFVRVSPRRYRFSSRSDGDGVSISGATNVWVDHCFLSRCFDGLIDVVHGSTAVTISNNYMTHHEKVMLLGHSDSYEKDRNMQVTVAYNHFGEGLGGRMPRCRFGYFHVVNNDYTHWKHYAIGGSSNPTIFSQGNRFLAPDDGEHKEVTKHFGASQSEWKRWNWKSEGDMMLNGAFFRSSGEEAASSVYSKTLSLAARPSEFVSSMTSAAGPLNCRRVPFW 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1334 404 FunFam Pectate lyase 55 397 - -
Lele22g1334 404 SMART amb_all 129 326 IPR002022 -
Lele22g1334 404 Pfam Pectate lyase 136 320 IPR002022 -
Lele22g1334 404 PANTHER PECTATE LYASE 18-RELATED 27 399 IPR045032 GO:0030570
Lele22g1334 404 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Lele22g1334 404 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Lele22g1334 404 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Lele22g1334 404 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Lele22g1334 404 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Lele22g1334 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Lele22g1334 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Lele22g1334 404 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Lele22g1334 404 SUPERFAMILY Pectin lyase-like 40 399 IPR011050 -
Lele22g1334 404 Gene3D - 55 397 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1334 Lele-ChrLele22 19130430 19133254 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1334 5 400 Polysaccharide Lyase AT5G63180 67.000 0.0 548