Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1332 ATGGCAATTCCATTGACGTTCACATTTCTCCTCCTACTTCTGGCTCCTTCCTTCATTTCATCTTCCCCACTTCAAGATCCAGAATTAGTAGTCGAACAAGTACACAAGAGCATCAATGCGTCGAGAAGAAACCTGGGGTTTCTTTCTTGTGGAACCGGGAATCCCATGGATGATTGTTGGAGGTGTGATCCCAACTGGCATAAGAACAGAAAGCGTCTCGCAGATTGCGGCATTGGGTTCGGCAAGAACGCAATCGGAGGCAGAGATGGCAGATTCTACGTCGTCACCGACCCCGGCGACCACCCTGTGAATCCCAAGCCCGGAACTCTCAGATACGGCGTTATACAGAACAAACCACTGTGGATCGTCTTCAAGAGGGACATGGTGATCAAGCTCAAACAAGAACTTATCATGAACTCCTTCAAAACCATCGATGGCAGAGGAGCAAATGTTCACATCTCAGGTGGTCCTTGCATCACAGTCCAGTTCGTCACCAACATCATAATCCACGGAATCAACATTCATGACTGTAAACGAGGAGGTAATGCTTATGTCCGAGATTCTCCTACACATTTCGGTTGGAGAACGGTGTCGGACGGCGACGGAGTTTCCATTTTCGGAGGAAGCCACATCTGGGTTGATCACTGTTCTCTATGGAATTGCCAAGATGGACTAATCGACGCGATTCATGGATCGACGGCGATCACAATCTCGAACAATTACATGACTCGCCATGACAAGGTTATGCTTCTTGGTCACAGTGACAGTTACACACAGGACAAGAACATGCAGGTCACCATTGCCTTCAACCATTTCGGTAAAGGCTTAGTCCAGAGAATGCCAAGATGCAGACATGGGTACTTCCATGTGGTAAACAATGATTACACACAGTGGCAGATGTATGCGATAGGAGGGAGTGCTAATCCAACAATAAACAGTCAAGGAAACAGATTTCTTGCTCCTAATGACGGAACCTTGAAAGAGGTGACGAAGAGGGAGTATACGCCGGAGAGTGTATGGAAGAACTGGAACTGGAGGTCTTCAGGGGATCTGATGCTAAACGGTGCATTTTTCACGGCGTCCGGCAAGGGAGCGTCTTCGAGCTATGCTCGAGCTTCGAGTTTGTCTGCAAAATCATCATCTTTGATTAGTTCTATGACAGCTTCATCTGGAACACTTAAATGCAGAAGGGGCTCGCGTTGCTGA 1206 0.4768 MAIPLTFTFLLLLLAPSFISSSPLQDPELVVEQVHKSINASRRNLGFLSCGTGNPMDDCWRCDPNWHKNRKRLADCGIGFGKNAIGGRDGRFYVVTDPGDHPVNPKPGTLRYGVIQNKPLWIVFKRDMVIKLKQELIMNSFKTIDGRGANVHISGGPCITVQFVTNIIIHGINIHDCKRGGNAYVRDSPTHFGWRTVSDGDGVSIFGGSHIWVDHCSLWNCQDGLIDAIHGSTAITISNNYMTRHDKVMLLGHSDSYTQDKNMQVTIAFNHFGKGLVQRMPRCRHGYFHVVNNDYTQWQMYAIGGSANPTINSQGNRFLAPNDGTLKEVTKREYTPESVWKNWNWRSSGDLMLNGAFFTASGKGASSSYARASSLSAKSSSLISSMTASSGTLKCRRGSRC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1332 401 Pfam Pectate lyase 134 318 IPR002022 -
Lele22g1332 401 FunFam Pectate lyase 53 394 - -
Lele22g1332 401 SUPERFAMILY Pectin lyase-like 39 395 IPR011050 -
Lele22g1332 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Lele22g1332 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Lele22g1332 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Lele22g1332 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Lele22g1332 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Lele22g1332 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Lele22g1332 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Lele22g1332 401 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Lele22g1332 401 Gene3D - 53 394 IPR012334 -
Lele22g1332 401 PANTHER PECTATE LYASE 18-RELATED 24 399 IPR045032 GO:0030570
Lele22g1332 401 SMART amb_all 127 324 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1332 Lele-ChrLele22 19116436 19118011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1332 3 401 Polysaccharide Lyase AT5G63180 75.495 0.0 633