Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1306 ATGGCAATTGAAGAGGAAATTAAGGCAGAGTTCGGAAGAAGCGGGTTTGACCTTGAAGATGAAGAAGAAGTACTAAACAAATGTCTCCCATTTTGCATAAACTACAGTCTCAAACCTTCCGATCTCGTTTCAAGTTGGGAGGTTTATTATCTAAACAGACAGCTGAATGGATCAACAGTTCAAAGTGCTGAAATCGATGACTTTTTGGCTCACCTACAAAATGAGCAGAAAGAAGCTATTATCAAGGAGGAAACTGATATTCATATTTACTCAAGTAGGGATGTAGAAATGCTCTTAAATGATGATGATATTTCAAAAGATAATGCTCCTGGAACTCCAACAGACCACCAACAAGTTCTTCTATCACCTGCATATGATTCAACCTCTTTAACTAATGGGAGTGTTTTGTCATCTGGAAAATCATCAAAGCCTGCGACAGCATTTTCTAAGCGAACAAATAGGCTTGAGGTGAAGTTCAGCATCAACAACACGGCTAATCTAGAGAATGGAAAACAAGAACCTGGTCACGAGAATGATGAGGATGACATACTCAGGAAGGTTCATCCACGGCAAAGGTGTTCATTGGTGGTTCATGGATCAGGGCCCAAACCAGGTTGTAGATTCATGTATGATAGGACTGAAGATAGGTTTAATGCATTAGAAAACCGAATTAAGAAACATACAAGGGTACATGTGGCTTCTGGGCTTTATGAAGAACCAATGGACCCAACAATTGCTTCACAGAGAAGCATTTTCACTGTTGGCATGATTTGTTGTGAGGGAGAAGGGCGTCTAAATGAGAAGTCTGTCATGCTGCAGAGCAGTGCTGAGAGCTCTGGAGGGCATCGGGTTCGCCTAGAGTTACAACAACTAAGCCACTTTTCAGTTTTCCCAGGCCAGGTAGTTGGTATTGAAGGGCATAATCCCAGTGGACATTGTTTAGTGGCATCCAAAATGGTAGATTCTATAGTTTCTTCTGTTGGTGATAGTGAGAATTTGAATCCAGCAAAGAAGCAAGCCTTTGATAAGGAAAATCTTCCGACTGATCTGCCCTGCAAGCAGAGGGAGTTATCAATGGTTATTGCAGCTGGCCCTTTTACCACCGCAGACAATTTATTGTTTGAACCTCTTGCAGAACTACTGGCATGTGCAAAGAAAAGACCACCACAATTTATTATATTGATGGGACCATTTATCGATGCTGAACACCCAGACATTAAAAGGGGAACCACAGAAAGGAGCTATGATGAAATATTTCGTATTGAAATCCTCAGAAAGTTGGAAGATTATGTAGAGTGTATGGGTTCTGCAGTACGTATTCTTCTTGTACCATCTATACGGGATGCTAACCATGATTTTGTTTTCCCTCAGCCCGCATTTGATATCAATCTTCCTGATCTCAAGCCTCAGATAGCCAGTCTCACTAATCCTGGAATTTTTGAGGCAAATGAGGTAAAGGTTGGTTGCTGCACTGTGGATATCCTCAAGCAGCTCAGTGGGGAGGAAATATCACGATTTTCAGCAGATGCGAAACCTATTGATCGCATGGGTAGACTTGTAAACCATATTCTTAAGCAACAAAGCTTTTATCCTCTTTATCCACCGGCAGAAAGTGTTCCTTTGGACTATTCTCTATCTCCAGAAGCTCTTCAAGTCCCGTGGGTACCAGATGTTCTCATTTTACCTTCAGACATCAAGTACTTTATCAAGGTGCTTAATGAAGAAAGTGAAGGGAACCACATGAAGTGCATTTCTGTCAATCCAGGAAGACTAGCCAAGGGAGAAGGAGGGGGTACTTTCGCCGAGCTCGACTTCTATGCGAGTGCCGACTCAAGCAATGCTTCAATTGTTGGCATATAA 1860 0.4194 MAIEEEIKAEFGRSGFDLEDEEEVLNKCLPFCINYSLKPSDLVSSWEVYYLNRQLNGSTVQSAEIDDFLAHLQNEQKEAIIKEETDIHIYSSRDVEMLLNDDDISKDNAPGTPTDHQQVLLSPAYDSTSLTNGSVLSSGKSSKPATAFSKRTNRLEVKFSINNTANLENGKQEPGHENDEDDILRKVHPRQRCSLVVHGSGPKPGCRFMYDRTEDRFNALENRIKKHTRVHVASGLYEEPMDPTIASQRSIFTVGMICCEGEGRLNEKSVMLQSSAESSGGHRVRLELQQLSHFSVFPGQVVGIEGHNPSGHCLVASKMVDSIVSSVGDSENLNPAKKQAFDKENLPTDLPCKQRELSMVIAAGPFTTADNLLFEPLAELLACAKKRPPQFIILMGPFIDAEHPDIKRGTTERSYDEIFRIEILRKLEDYVECMGSAVRILLVPSIRDANHDFVFPQPAFDINLPDLKPQIASLTNPGIFEANEVKVGCCTVDILKQLSGEEISRFSADAKPIDRMGRLVNHILKQQSFYPLYPPAESVPLDYSLSPEALQVPWVPDVLILPSDIKYFIKVLNEESEGNHMKCISVNPGRLAKGEGGGTFAELDFYASADSSNASIVGI 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1306 619 FunFam DNA polymerase alpha subunit B 340 505 - -
Lele22g1306 619 PIRSF DNA_pol_alpha_2 1 616 IPR016722 -
Lele22g1306 619 Gene3D - 2 78 IPR043034 -
Lele22g1306 619 FunFam DNA polymerase alpha subunit B 2 76 - -
Lele22g1306 619 Pfam DNA polymerase alpha subunit B N-terminal 23 227 IPR013627 -
Lele22g1306 619 Pfam DNA polymerase alpha/epsilon subunit B 360 570 IPR007185 GO:0003677|GO:0006260
Lele22g1306 619 Gene3D - 342 512 - -
Lele22g1306 619 Gene3D - 513 616 - -
Lele22g1306 619 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 4 609 IPR016722 -
Lele22g1306 619 Coils Coil 210 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1306 Lele-ChrLele22 18542233 18548137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1306 1 619 Core DNA Replication Machinery Family AT1G67630 58.039 0.0 752
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1306 22 18542233 18548137 Lele23g0726 23 5809362 5820232 hybridization
Lele22g1306 22 18542233 18548137 Lele24g1228 24 16244374 16270756 hybridization