Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1293 ATGGATGCAGCTGAGGTTGAAGAAAATCTGTTTGCAACAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCTCTTTCTATTATATATTGCAAAGTATCGTCAATATTTCCATCTCTAGAAGCAGCTAGGCCTAGGAGCAAAGCTGGTATTGAGGCTTTATGTTCATTGCATGTAGCCCTAGAGAAGGCCAAGAATGTTCTTCAGCACTGCTCACAGTGTAGTAAACTTTACTTGGCTATAACTGCGGATGCTGTTCTTCTAAAATTTGAGAAGGCTAAATCTGCTATTAAAGATGGCCTTATGCAGGTGGAGGATATTGTTCCGCGGTCCATTGCATGTCAGTGTCAGGAGATTGTGAATGAACTCGATGGTGTAAAATTTGCACTTGACCCATTGGAGAAGCAAGTTGGTGCTGATTTAATTGCATTGCTTCAGCAAGGGAGACAATGTAGCGACTCTAGTGACACCAGCGAGCTTGAATGTTTTCACCAGTGTGCTATTATACTCGGAATCACTTCTTCGAGAGAAGCTCTTACAGAAAGAAGAGCTCTCAAAAAGCTCATTGAAAGAGCTAGGGCTGAGGAAGACAATCAGAAGGAATCAAAAGTTGCATATCTTCTACACCTCTTGAGGAAGTATTCCAAGTTATTTAAGAGCGAAATTTCAGATGATAATGATTCACAGGGTTCTGCTCCTTGTTCTCCCTCTACTCATGGATCTGTTGAGTGCAGTGTTCCTAATAGTCAATACCATGCCCTCGAAAGAGAGATTTCAAAACGCTGTTCCATTAAGTTAAATCCAATCAATAGGAAATCAGGGCGGATGCATCTTCCGCCTGAAGAGTTGAAGTGTCCAATATCTTTGCAGCTTATGTATGATCCTGTCATCATTGTTTCCGGACAAACATATGAAAGGGTTTGCATTGAGAAATGGTTCAGAGATGGACACAGCACTTGCCCCAAGACTCAACAGAAACTCGATCATCTTTTATTGATTCCGAATTACTGTGTTAAGGGTCTTCTCATTAGCTGGTGTGAACAGAATGGAGTTCCTGTTCCTGATGGCCCTCCTGAATCTTTTGATCTTAACTACTCGAGATTGGCTTTATCAGAGCCTGAATCAACAAATTCAAAATCTGTAAACAGTTTAAGCTCATGCAAGTTGAAGGGTGAGAAAGTGGTTCCTTTAGAAGAGAGCAGTATCTCAGAGGAAGCCGGAGTAGACAAAAATGAAGGTTTATCCGCACAAGAGGAAGATACTGAGCAGTATCTAAGGTTTCAGCAAGCTTTGGTTGAAGAGACCAATTACAAGACGAAGTGCAATGTGGTCGAACAGTTAAGGATATTACTGAGGGATAACGAGGAAGCCAGAAATTTTATGGGATCTCATGGATTTGTTGAGGCACTTTTGCAGTTTCTAAAGTCAGCTGTGTCTGAGGGGAATCTGAAGGTTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAATAGAAATAAGGCAATTATGTTATCAGCAGGAGTATTACCATTGCTGGAGGAAATTTCTAACTCAAGTTCATATGGTGGTGCAACGGCCCTCTATCTGAACCTGTCTTGCCTTGAAGAAGGCAAAACAAAGATTGGGAAGACTCAGGCTGTCCAGTTCCTAATCCGTCTCCTTCAAGCCGACACCGAAGTTCAATGCAAACAAGATTCCCTTCATGCACTCTATAATCTCTCCACTGTCCCTTCAAATATTCCAAACCTCCTTTCATCTGGGATCATCAATGGTCTTCTATCCCTTCTTTCAGAACAGGGTGATAATGATAATAGCATGTGGACAGAGAAATGCATTCCTGTTCTGATAAATTTGGCTGCTTCTAATTTGGGAAGAGAGGAAATAATCTCAACCCCAGGACTCATTAATGCACTGGCTAAGAAACTAGAATCTAGTGAGCTCTTGGAGCAAGAACAAGCTGTGTCTTGTCTTTTAGTCTTGTGTAATGGGAATGAGAAATGTAGCCACAAGGTCCTACGAGAAGGTATAATACCTTCATTGGTTTTGATATCAGTAAATGGGACCCCAAGAGCGAAAGAAAAAGCTCAGAAACTTTTGATGCTCTTTAAGGAGCAGCGACAACGAGATCCTTCACCTGTTAAGACGCATTTGTGTCCCCCCGTTGCTCCTGAACCTAAAAAGAATGTGGCTGTCGTTCCTCAGCCAGAAACAAAACCTGCGATGATTAAGTCACTGTCTAGAAGAATAATTGAGAAGCCTTTCAGATTTTTCCACAAAAGCAAGAGTTATTCTATTTACCATATTTAG 2319 0.4157 MDAAEVEENLFATSDAKLHGEMCKALSIIYCKVSSIFPSLEAARPRSKAGIEALCSLHVALEKAKNVLQHCSQCSKLYLAITADAVLLKFEKAKSAIKDGLMQVEDIVPRSIACQCQEIVNELDGVKFALDPLEKQVGADLIALLQQGRQCSDSSDTSELECFHQCAIILGITSSREALTERRALKKLIERARAEEDNQKESKVAYLLHLLRKYSKLFKSEISDDNDSQGSAPCSPSTHGSVECSVPNSQYHALEREISKRCSIKLNPINRKSGRMHLPPEELKCPISLQLMYDPVIIVSGQTYERVCIEKWFRDGHSTCPKTQQKLDHLLLIPNYCVKGLLISWCEQNGVPVPDGPPESFDLNYSRLALSEPESTNSKSVNSLSSCKLKGEKVVPLEESSISEEAGVDKNEGLSAQEEDTEQYLRFQQALVEETNYKTKCNVVEQLRILLRDNEEARNFMGSHGFVEALLQFLKSAVSEGNLKVQESGAMALFNLAVNNNRNKAIMLSAGVLPLLEEISNSSSYGGATALYLNLSCLEEGKTKIGKTQAVQFLIRLLQADTEVQCKQDSLHALYNLSTVPSNIPNLLSSGIINGLLSLLSEQGDNDNSMWTEKCIPVLINLAASNLGREEIISTPGLINALAKKLESSELLEQEQAVSCLLVLCNGNEKCSHKVLREGIIPSLVLISVNGTPRAKEKAQKLLMLFKEQRQRDPSPVKTHLCPPVAPEPKKNVAVVPQPETKPAMIKSLSRRIIEKPFRFFHKSKSYSIYHI 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1293 772 Gene3D - 623 705 IPR011989 -
Lele22g1293 772 PANTHER U BOX DOMAIN-CONTAINING 21 711 - -
Lele22g1293 772 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lele22g1293 772 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Lele22g1293 772 SUPERFAMILY RING/U-box 275 355 - -
Lele22g1293 772 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lele22g1293 772 CDD RING-Ubox_PUB 285 325 IPR045210 -
Lele22g1293 772 Gene3D - 428 622 IPR011989 -
Lele22g1293 772 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Lele22g1293 772 SMART arm_5 454 498 IPR000225 GO:0005515
Lele22g1293 772 SMART arm_5 538 579 IPR000225 GO:0005515
Lele22g1293 772 SUPERFAMILY ARM repeat 432 705 IPR016024 -
Lele22g1293 772 MobiDBLite consensus disorder prediction 224 241 - -
Lele22g1293 772 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lele22g1293 772 Coils Coil 175 202 - -
Lele22g1293 772 MobiDBLite consensus disorder prediction 222 241 - -
Lele22g1293 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1293 Lele-ChrLele22 18450584 18454265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1293 1 771 U-box Gene Family AT1G24330 61.499 0.0 923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1293 22 18450584 18454265 Lele22g1293 22 18450584 18454265 ECH
Lele22g1293 22 18450584 18454265 Lele24g1236 24 16409480 16413145 hybridization