Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1292 ATGGTGAAGTACTCCAGAGAACCTGACAATCCTACCAAGTCCTGCAAGGCCAGAGGCTCCGACCTTAGAGTTCATTTTAAGAACACTAGGGAGACAGCGTTTGCCATCAGGAAGTTGCCCTTGGCAAAGGCAAAAAGGTACTTGGAGGATGTGTTAGCCCACAAACAGGCTATTCCCTTCAGAAGGTTCTGTGGCGGTGTTGGGAGGACAGCCCAGGCAAAGAACAGACATTCTAATGGACAAGGACGATGGCCCGTTAAGTCAGCTAAATTCATTCTTGATTTGCTCAAGAATGCGGAAAGTAATGCTGAAGTGAAAGGCTTGGATGTAGATGCTCTCTACATTTCTCATATCCAGGTTAATCAAGCACAAAAGCAAAGACGCAGAACCTACCGAGCTCACGGAAGAATCAACCCCTACATGTCGTCTCCATGCCACATAGAGTTGACACTATCTGAAAAAGAAGAGCCTGTGAGGAAGGAGCCGGAGACCCAGTTGGCAACGAGCAACAAAGCCTAA 519 0.4759 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSEKEEPVRKEPETQLATSNKA 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1292 172 PANTHER 60S RIBOSOMAL PROTEIN L17 1 171 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele22g1292 172 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele22g1292 172 Gene3D Ribosomal protein L22/L17 1 172 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lele22g1292 172 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lele22g1292 172 Pfam Ribosomal protein L22p/L17e 17 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lele22g1292 172 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele22g1292 172 FunFam 60S ribosomal protein L17 1 172 - -
Lele22g1292 172 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lele22g1292 172 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1292 Lele-ChrLele22 18420820 18422744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1292 1 171 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.889 4.22e-115 322