Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1245 ATGGCAATATTGAAAAAGTCCGGTGTATCTGATGCCATTCCACCTAGAAGTGGGGGCGTTGTTCTTGCCCAATTTTCCTGTTTCGATATCCGCCTCTCACAGTCACTGGTTGAGAATTCTGTTCACTTAGCTTTAAACAAGGGGAGATTCTCTGGATTTGACAGTGGTTCTCTCGCTAGACTACCTGGAATTAGCTCGAAGTCGTATCCAGTACCTCCTGGAACTGTTTCTTGTTCACTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGACATCTTCTTTTGGCGCTGTGTTGCTGGATTTTATCAGTCGTATACATGTACTGGTTCAACAACGGAGGAATTATGGAAACCAAGCTACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGACGAAAGATCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCGATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACAGAACGAACTGCTTTTGAGAGGCCCCTTACAAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCGACAAGGTTGGACCATTAAGAGGATGGATACTCTTGAGCAGAACCCTATGCATGAGGATGACTATGCTCCTGAGGCATTGGAGCCTTCCCCAGTTCGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTTTTGCGTGCTAGAGAGTTAGGGAAAGGAGTTCTAACTGCTCCTTTTAGGCTGCTCAAAACAAATCATCTAGGAGTTATCCTCACTTTTGCAGTCTACAACGCAGATCTTCCATCAAATGCAATGCCAAATGAAAGGATTCAAGCGACAAATGGGTATCTCGGAGGCGTCTTTGATATTGAGTCATTAGTTGAAAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGCTGATGGATTCTATCATGTTAGCTCCCTGAACTTTGGAGATCCTTTCCGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGTTGGCAATTGCTACATCAATTGGCATCCTTGTTATTGCGCTCCTTGTAGGGCAGATTTTTCATGCTACTGTGAATCGAATTGCTAAAGTGGAGGATGATTACCATGAGATGATGGAACTTAAAAAACTAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCACGAGATCAGAACACCAATGAACGGTGTTCTTGGAATGTTGCACATGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCGCTTATAAATGAGGTTCTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTCGAGGCGGTGCTATTTGACATACGAGCAGTTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATTAAGTTCACGGACAAAGGGCACATATTTGTCACTGTCCATCTTATTGAGGAAGTTGTCAATTCAATCGAAGTTGCAACATCAAAGAATACTTTGAGTGGCTTTCCTGTTGCTGACAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTTAATCAAGAGGGACCTCTGGGTTCTTTCTCTTCATCTTCCTGCTCCGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTATAGAAGCCCAATCTCGCATCTTCACTCCATTCATGCAGGTTGGTCCATCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGCATACCAAAGGTTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCTCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAACAACCAACCTAACCTAGCATCCTCAGAATTTCAGGGCATGAATGCCCTTGTTATAGAGCCTAGACCCGTCAGAGCTAAAGTGTTGAAATATCACATTAAACGGCTTGGCATTCTTGTTGAAATAGCTCCAGATTTAAATCAAGGTTTGTCTGTCATAAGCAATGGGGATACAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCTGGTGTTTCATCTCAGTTTACCAATAACATGAGGAAAATTGATCTCGGCGTTCCTCCGAAGCTGTTCATTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAATCCAACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGCGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCTCCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAATAGTGTGAACCGAACAGTAGCAGCTGGAGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGATGCCATCTCTATGCTGAAGCCGCCCCATCAATTTGATGCATGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATGGAACACCATGTAAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTATGACTGCAGACGTGATTCAGGCAACGCATGAGGAATGTGTGAAGTGTGGAATGGATGGATATGTGTCAAAGCCATTTGAAGCTGAGCAGCTTTATCGGGAAGTTTCACGGTTTTTCATATCAACTTCATGA 3144 0.4294 MAILKKSGVSDAIPPRSGGVVLAQFSCFDIRLSQSLVENSVHLALNKGRFSGFDSGSLARLPGISSKSYPVPPGTVSCSLVLVTVVDEFALCSWIWPKVGTSSFGAVLLDFISRIHVLVQQRRNYGNQATEKRKETLASMCDERSRMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKRQGWTIKRMDTLEQNPMHEDDYAPEALEPSPVREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNHLGVILTFAVYNADLPSNAMPNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSADGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVIALLVGQIFHATVNRIAKVEDDYHEMMELKKLAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDIRAVLDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKNTLSGFPVADRCQSWKGFSSVNQEGPLGSFSSSSCSDRITLIVSVEDTGEGIPIEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSIPKVGSTFTFTAVFTNESSSSTEGKTQQINNQPNLASSEFQGMNALVIEPRPVRAKVLKYHIKRLGILVEIAPDLNQGLSVISNGDTVINMILVEHEVWDRDSGVSSQFTNNMRKIDLGVPPKLFILVNSSSSSRTSSVTLGVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLLHLLRGRKILIVDDNSVNRTVAAGALKKYGADVVCVNSGKDAISMLKPPHQFDACFMDIQMPEMDGFEATRRIREMEHHVNIGEVPVETLENTSNWHLPILAMTADVIQATHEECVKCGMDGYVSKPFEAEQLYREVSRFFISTS 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1245 1047 Gene3D - 525 737 IPR036890 -
Lele22g1245 1047 SMART HisKA_10 461 526 IPR003661 GO:0000155|GO:0007165
Lele22g1245 1047 ProSiteProfiles Histidine kinase domain profile. 468 734 IPR005467 -
Lele22g1245 1047 Gene3D - 904 1045 - -
Lele22g1245 1047 SMART CHASE_2 174 375 IPR006189 -
Lele22g1245 1047 Pfam His Kinase A (phospho-acceptor) domain 461 526 IPR003661 GO:0000155|GO:0007165
Lele22g1245 1047 CDD REC_hyHK_CKI1_RcsC-like 911 1039 - -
Lele22g1245 1047 Pfam CHASE domain 177 373 IPR006189 -
Lele22g1245 1047 CDD PRTases_typeI 863 938 IPR000836 -
Lele22g1245 1047 CDD HATPase_EvgS-ArcB-TorS-like 578 732 - -
Lele22g1245 1047 SMART REC_2 909 1039 IPR001789 GO:0000160
Lele22g1245 1047 Pfam Response regulator receiver domain 911 1038 IPR001789 GO:0000160
Lele22g1245 1047 Gene3D - 428 524 - -
Lele22g1245 1047 FunFam Histidine kinase 4 433 524 - -
Lele22g1245 1047 CDD HisKA 461 522 IPR003661 GO:0000155|GO:0007165
Lele22g1245 1047 Gene3D CHASE domain 178 407 IPR042240 -
Lele22g1245 1047 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 447 527 IPR036097 GO:0000155|GO:0007165
Lele22g1245 1047 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 515 729 IPR036890 -
Lele22g1245 1047 SUPERFAMILY CheY-like 757 885 IPR011006 -
Lele22g1245 1047 SMART HKATPase_4 573 734 IPR003594 -
Lele22g1245 1047 PRINTS Bacterial sensor protein C-terminal signature 659 673 IPR004358 GO:0016310|GO:0016772
Lele22g1245 1047 PRINTS Bacterial sensor protein C-terminal signature 694 712 IPR004358 GO:0016310|GO:0016772
Lele22g1245 1047 PRINTS Bacterial sensor protein C-terminal signature 677 687 IPR004358 GO:0016310|GO:0016772
Lele22g1245 1047 ProSiteProfiles CHASE domain profile. 174 400 IPR006189 -
Lele22g1245 1047 PANTHER TWO-COMPONENT HISTIDINE KINASE 139 1036 - -
Lele22g1245 1047 Gene3D - 126 177 - -
Lele22g1245 1047 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 573 732 IPR003594 -
Lele22g1245 1047 Gene3D - 758 888 - -
Lele22g1245 1047 ProSiteProfiles Response regulatory domain profile. 910 1043 IPR001789 GO:0000160
Lele22g1245 1047 ProSiteProfiles Response regulatory domain profile. 762 884 IPR001789 GO:0000160
Lele22g1245 1047 FunFam Histidine kinase 4 178 407 - -
Lele22g1245 1047 SUPERFAMILY CheY-like 906 1041 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1245 Lele-ChrLele22 13761796 13768302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1245 125 1047 Miscellaneous Gene Families AT1G27320 71.720 0.0 1347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele22g1245 CHASE 5.4e-36 CL0165