Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1235 ATGCAATTCGCAAAGCTCGACGACTCTCCTATGTTTCGCAAGCAGATACAATGCTTGGAGGAGAGTTCAGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAAGGGTGCAGAAAATACACTGAAGGACTTGGGGAGGCATACGATGGTGACATTGCATTTGCGAGTGCTTTGGAAACTTTTGGTGGAGGCCATAATGATCCTATCAGTGTTGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTGAGAGAAATTGGGACATACAAAGAAGTCCTTCGCTCACAGGTTGAACATATGCTAAATGACAGATTACTCCAATTTGTTAATATTGATTTGCATGAAGTCAAGGAAGCACGCAAGCGTTTTGACAAAGCTAGTCTTATTTATGATCAGGCTCGTGAAAAGTTCCTGTCTTTAAGAAAAGGCACAAAAACAGATGTAGCTACTGTTCTTGAAGAGGAGCTTCATAACGCAAGATCCACTTTTGAGCAAGCTCGATTTAATCTGGTTACTGCCTTGTCAACTGTTGAAGCCAAGAAGAGATTTGAATTTTTGGAGGCAATCAGTGGGACCATGGATGCGCATCTTCGCTACTTCAAACAGGGGTATGAATTATTGCACCAAATGGAGCCATATATTAACCAGGTTGTGACATATGCTCAGCAGTCAAGAGAAAGATCCAACTATGAGCAAGCAGCTCTTAATGAAAGAATGCAAGAGTACAAAAGGCTGGTTGATCGAGAGAGTAGGTGGTCTTCAAATGGTTCTGATGGGTCTCCTAATGGAGATGGTATACAAGCCATCGGTAGAAGTTCACATAAAATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTTTCAAAGCGGTCTTCAAACTTAAGGGGTGACTGGAAAAGGAGGTTTTTTGTTCTTGACAGTCGAGGAATGTTGTATTACTATCGTAAGCAGTGCAGCAAATCTGGGTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGGCTCTTGAGCCGATGGCTATCTTCTCATCATCATCATGGTGGGGTACATGATGAAAAATCTGTTGCTCATCACACGGTGAACCTGCTTACATCGACAATCAAAGTTGATGCTGACCAATCAGACTTGAGGTTTTGCTTCAGAATCATTTCACCAACAAAGAACTACACCTTGCAGGCAGAGAGTGCACTTGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCTTCATTGCTGAGTTCTCAGATTCCTGAAAGGTGCCTTCCTGCTAGTCCAAAGGGAAGTGGTCATAATAGGTCTACCAGTGAGAGTAGTTCTTTCGAAAGTTCAGATTTTGATCACTCTGCTGTAGAGGAATATAAATCTGCACATATGGAACGCCCCTCAAGAAGCTTGCAGCAGCAGCAACGAGCATGTATCAAAAGTGAGAAGCCAATTGATGTTCTGCAAAGAGTTAGTGGAAATGATATATGTGCCGATTGTGGGGCGCCTGAACCTGATTGGGCATCATTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCACCGAAATCTTGGTGTACACATATCAAAGGTAAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTGTTTCAATCACTTGGGAATGCCTTTGCCAACTCAGTCTGGGAGGAATTGTTGCAATCAAGAAGTGCCTTTCAGATTGAACTTGTCCCCACAGGCTTAAGTAAGTCCGACAAACCACAGGTTCCCTTCAGCAAACCTTGTCAATCTGATTCTTTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTACGCAGAGAAGCTTTTTGTTCACAAGCCAAAGGATAATCAATATCGTCTCTTGGTGGCACAACAGATCTGGGAGGCTGTTCGTTCTAATGACAAAAAAGCAGTTTACCACTACATTGTTAATTATGAAGTTGATGTTAATGCTGTATATGAGCAGACATGCAGCTCTTCTTTGACCCTTGCCAAAGTGATGCTATTACAAGAGCACACAGGCCATGATCACAACTCTACTTTAGCAGGGAACGCATTCGACTGGTCCTCTACTTGCCCTTTGAATATGGTGGGAGCAAAAGAAGATCAGGCCATGAATGATCTTGATGGGTGCACCCTACTTCATCTTTCTTGTGAAACTGCAGACATTGGCATGCTGGAGCTCCTTCTTCAGTATGGTGCAAGTATTAATGCCACTGACATGAGAGGCCAAACGCCTCTCCATCGCTGCATTCTCAAAGGAAGATCTACATTGGCAAGATTACTTCTCTCAAGGGGAGCTGATCCTCAAGCTGTCGATGAAGAGGGAAGAACCCCCCTTGACCTTGCCATACAGTCAAACTTTGACGACAGTGAAGTGCTTGCTTTATTATCTGATTCAAACGGATGA 2475 0.4279 MQFAKLDDSPMFRKQIQCLEESSESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLHEVKEARKRFDKASLIYDQAREKFLSLRKGTKTDVATVLEEELHNARSTFEQARFNLVTALSTVEAKKRFEFLEAISGTMDAHLRYFKQGYELLHQMEPYINQVVTYAQQSRERSNYEQAALNERMQEYKRLVDRESRWSSNGSDGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERCLPASPKGSGHNRSTSESSSFESSDFDHSAVEEYKSAHMERPSRSLQQQQRACIKSEKPIDVLQRVSGNDICADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSAFQIELVPTGLSKSDKPQVPFSKPCQSDSLSVKEKFIHAKYAEKLFVHKPKDNQYRLLVAQQIWEAVRSNDKKAVYHYIVNYEVDVNAVYEQTCSSSLTLAKVMLLQEHTGHDHNSTLAGNAFDWSSTCPLNMVGAKEDQAMNDLDGCTLLHLSCETADIGMLELLLQYGASINATDMRGQTPLHRCILKGRSTLARLLLSRGADPQAVDEEGRTPLDLAIQSNFDDSEVLALLSDSNG 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1235 824 ProSiteProfiles Ankyrin repeat region circular profile. 764 796 - -
Lele22g1235 824 ProSiteProfiles Ankyrin repeat region circular profile. 731 762 - -
Lele22g1235 824 Gene3D Arf GTPase activating protein 474 637 IPR038508 -
Lele22g1235 824 SUPERFAMILY Ankyrin repeat 650 812 IPR036770 -
Lele22g1235 824 ProSiteProfiles Ankyrin repeat profile. 764 796 IPR002110 GO:0005515
Lele22g1235 824 CDD ArfGap 498 626 - -
Lele22g1235 824 Pfam PH domain 294 427 IPR001849 -
Lele22g1235 824 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Lele22g1235 824 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Lele22g1235 824 Pfam Putative GTPase activating protein for Arf 498 634 IPR001164 GO:0005096
Lele22g1235 824 CDD PH_ACAP 295 432 - -
Lele22g1235 824 ProSiteProfiles ARF GTPase-activating proteins domain profile. 495 639 IPR001164 GO:0005096
Lele22g1235 824 Pfam Ankyrin repeats (3 copies) 727 794 IPR002110 GO:0005515
Lele22g1235 824 PRINTS HIV Rev interacting protein signature 507 526 IPR001164 GO:0005096
Lele22g1235 824 PRINTS HIV Rev interacting protein signature 526 543 IPR001164 GO:0005096
Lele22g1235 824 PRINTS HIV Rev interacting protein signature 549 570 IPR001164 GO:0005096
Lele22g1235 824 Pfam BAR domain of APPL family 6 232 - -
Lele22g1235 824 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Lele22g1235 824 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Lele22g1235 824 Gene3D - 285 438 IPR011993 -
Lele22g1235 824 Coils Coil 118 138 - -
Lele22g1235 824 SUPERFAMILY PH domain-like 293 445 - -
Lele22g1235 824 Gene3D Arfaptin homology (AH) domain/BAR domain 4 249 IPR027267 -
Lele22g1235 824 SMART PH_update 293 430 IPR001849 -
Lele22g1235 824 SMART arf_gap_3 495 639 IPR001164 GO:0005096
Lele22g1235 824 MobiDBLite consensus disorder prediction 248 270 - -
Lele22g1235 824 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 476 640 - -
Lele22g1235 824 MobiDBLite consensus disorder prediction 440 464 - -
Lele22g1235 824 CDD BAR_SFC_plant 14 215 IPR035670 -
Lele22g1235 824 SUPERFAMILY ArfGap/RecO-like zinc finger 495 634 IPR037278 -
Lele22g1235 824 ProSiteProfiles Ankyrin repeat profile. 731 763 IPR002110 GO:0005515
Lele22g1235 824 MobiDBLite consensus disorder prediction 446 463 - -
Lele22g1235 824 Gene3D - 638 820 IPR036770 -
Lele22g1235 824 SMART ANK_2a 764 793 IPR002110 GO:0005515
Lele22g1235 824 SMART ANK_2a 797 824 IPR002110 GO:0005515
Lele22g1235 824 SMART ANK_2a 731 760 IPR002110 GO:0005515
Lele22g1235 824 PANTHER CENTAURIN/ARF 3 822 IPR045258 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1235 Lele-ChrLele22 13161929 13171726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1235 505 635 C2H2 Transcription Factor Family AT4G21160 43.939 9.59e-22 95.9