Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1226 ATGGATACCGTTAGGGTCGCAAGGAGAAGTGAGGTCCCTTCTTACAGGGACGCTCGTCGCGACTATTGGGTTGCAGGGCGACACAGCTATAAGCCCTCCCATACCACTGCTTATCTTAACAAGGCTCCTAAGAATGAAGTAGATCCCAAACGCAATTCATCTCAAATCTGCAAATACTGGATCAATGGAAACTGCGTCCACGGCGATCGCTGCTGAATGGATACAGTTACGGTCGCAAGGAGAAGTGAGGTCCCTTCTTATAGGGACGCTCGTCGCGACTGTTGGGTTGCATGGCGACACAGCTATAAGCCCTCCCATACCACTGCTTATCTTAACAAGGCTCCTAAGAATGAAGCAGATCCCAAACGCAATTCATCTCAAATCTGCAAATACTGGATGAATGGAAATTGCGTCCACGGCGATCGCTGTTGGTACTTGCTTTCCTGGTTTCAGGCCCCTTCCCTTTCTCTACTCACTAAGCTCCATCAACACAAGAAGATTGTCACCGGGATCACGCTTCCGGTTGGATCGGACAGACTTTTTTCTAGTAGCACTGATGGGACAATTCGGGTGTGGGACTGCCACACAGGTCAATGCGTCCATGTGATAAATATGGGCGAAGAAGCAAGGTTTTTGATCAGTGCGGGTTCTTGTGTTTTTGCAGGTTTACGGAATGCTATCAAAGTAAAAGCTCTTGCACTTGCATGGAACATTCAGACGGCTGTTGAGATCACTCTTGATGGACCTAAGGGTCCTGTACTTTCGATGGCTGTTTGCAACGATACACTTTTTGCTGGTGCCATGGTCTGGGGCCTCGACACATTACAATGCACGATGACGTTGAAAGGGCACACTGATGTGGTGACATCCCTTATTTTCTGGGACCAATACTTGTTCTCAAGTTCTTTGGACGGCACAGTAAAGCTTTGGACTGACACTCAGAAAGGAACTTTGGAAGTGGTTTACACGCACCAAGAACAAAGTGTGAGTTTATTTAGACAAGAAATTCGGATGGGTGCATGTTGTTATATGTTGTGGGATCGAAATGCCTCTAATATAGAAAGCATTGGTGATGTTGTTGCAGAGGGTGGTTAA 1095 0.4703 MDTVRVARRSEVPSYRDARRDYWVAGRHSYKPSHTTAYLNKAPKNEVDPKRNSSQICKYWINGNCVHGDRCXMDTVTVARRSEVPSYRDARRDCWVAWRHSYKPSHTTAYLNKAPKNEADPKRNSSQICKYWMNGNCVHGDRCWYLLSWFQAPSLSLLTKLHQHKKIVTGITLPVGSDRLFSSSTDGTIRVWDCHTGQCVHVINMGEEARFLISAGSCVFAGLRNAIKVKALALAWNIQTAVEITLDGPKGPVLSMAVCNDTLFAGAMVWGLDTLQCTMTLKGHTDVVTSLIFWDQYLFSSSLDGTVKLWTDTQKGTLEVVYTHQEQSVSLFRQEIRMGACCYMLWDRNASNIESIGDVVAEGG 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1226 364 Gene3D - 50 145 - -
Lele22g1226 364 SUPERFAMILY CCCH zinc finger 53 72 IPR036855 GO:0046872
Lele22g1226 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 202 IPR001680 GO:0005515
Lele22g1226 364 SMART c3hfinal6 51 73 IPR000571 GO:0046872
Lele22g1226 364 SMART c3hfinal6 123 149 IPR000571 GO:0046872
Lele22g1226 364 SUPERFAMILY CCCH zinc finger 125 146 IPR036855 GO:0046872
Lele22g1226 364 SUPERFAMILY WD40 repeat-like 151 329 IPR036322 GO:0005515
Lele22g1226 364 Gene3D - 146 231 IPR015943 GO:0005515
Lele22g1226 364 ProSiteProfiles Zinc finger C3H1-type profile. 123 146 IPR000571 GO:0046872
Lele22g1226 364 Pfam WD domain, G-beta repeat 157 193 IPR001680 GO:0005515
Lele22g1226 364 Pfam WD domain, G-beta repeat 276 310 IPR001680 GO:0005515
Lele22g1226 364 Gene3D - 232 344 IPR015943 GO:0005515
Lele22g1226 364 ProSiteProfiles Zinc finger C3H1-type profile. 51 71 IPR000571 GO:0046872
Lele22g1226 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 310 - -
Lele22g1226 364 PANTHER - 269 331 IPR044715 -
Lele22g1226 364 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 161 193 - -
Lele22g1226 364 SMART WD40_4 154 193 IPR001680 GO:0005515
Lele22g1226 364 SMART WD40_4 274 311 IPR001680 GO:0005515
Lele22g1226 364 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 310 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1226 Lele-ChrLele22 12260455 12263467 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele22g1226 WD40 0.00043 CL0186