Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1220 ATGTTTTGCCATCACTCACTCTTAATCACCCAGGAGGCCGTGTGTAACAGACAACACCGGCAAAAACACCCTCTTGCACTTATTTCCACTGTCACATTAACAACTACTCCAAGTTTGGAGAAACGAAGGTTAGATGTGTATATCTTTGATTATTTCATGAAGAGAAAACTGCATGCTTCTGCAAGGGCATTTCAGGCTGAAGGGAATATCTCAACAGATCTTGTAGCTATAGATGCTCCTAGGGGTTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGACATATTTATTGCCAAAACTGCGAGGAAAGATCAGAATCACTCGGAAACTGCATCATCTTACATTAAGAGTCTACAAACTAAGTCTCGAGAGATGCAGAAGCAACAAGAGCAAGATCATCAAAAACCGAATCGGCATCTAGAAATGCAAATGCAGCAACTTTTGTGGAGTCATGCCCAACAGCAACTACAGCCGCAGCAACAGCAATCTACGGGTGGGAGCCAAATTGTCAGAGACGGTACCACTGGTCCTCTTTGCAAGAATTCTCTAATGAGGCAGAACCATGGGACTGTAAATGCCATGGTAACAAAAGCTTATGAAGAGAGGTTGAAATTTCCTCTCCAGGGAGAGGCCTCGGATAATGCACCTGTTAGGCAAAAGACTGGTGGTGCTGTAGGTCAACTTGTCAGACCAATTAATGCCTCATTGTTGAAGGCAACCACAGCAGCTACAACAGCAACTGTTGGACGTCCTGCAGGTGAAACATTGCTTGATACACCTAGGGGTTTACCAAGGAATCTTCAACATGTTGAGAGTTGCAACCAGCAACTTGCAGGTTATAGTCAACTAATTTCTTTCCTTTTTTATTTCCTTGTCTTATTGTATGTGGCTATTGGTTTTGATGATCATTCTGAACTTTTAGGATCGAATCAAGGCAGTACCAGTTTGACTCTGAAAGGATGGCCTCTAGCAGGACTGGATCAGCTTTGCTCTGGGTTTCTCCCGCAGAATACTTTGATGCAGTCTCCGGAGTCCTTCAATCAACTTTCACTGCAGCAGCAACTCATGCTTCAAGCACAACAGAATTTAGTGGACACATCTGTCAACAATCTGGATAGATTGAGACTTAAAATGCTTCTTAATAATCAAAATATGGGTCCTGGGAAAGATGGCAATCAGAATCTTGTTGGTGATTTAATTCCTAATACTGGAACATCTGTTCATGAATTGCCTGACTTAGATACATCATTTACGGTATCGTCTGCATTATTAACTTGA 1275 0.4235 MFCHHSLLITQEAVCNRQHRQKHPLALISTVTLTTTPSLEKRRLDVYIFDYFMKRKLHASARAFQAEGNISTDLVAIDAPRGFLFEWWSVFWDIFIAKTARKDQNHSETASSYIKSLQTKSREMQKQQEQDHQKPNRHLEMQMQQLLWSHAQQQLQPQQQQSTGGSQIVRDGTTGPLCKNSLMRQNHGTVNAMVTKAYEERLKFPLQGEASDNAPVRQKTGGAVGQLVRPINASLLKATTAATTATVGRPAGETLLDTPRGLPRNLQHVESCNQQLAGYSQLISFLFYFLVLLYVAIGFDDHSELLGSNQGSTSLTLKGWPLAGLDQLCSGFLPQNTLMQSPESFNQLSLQQQLMLQAQQNLVDTSVNNLDRLRLKMLLNNQNMGPGKDGNQNLVGDLIPNTGTSVHELPDLDTSFTVSSALLT 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1220 424 Pfam LisH 44 68 IPR006594 GO:0005515
Lele22g1220 424 ProSiteProfiles LIS1 homology (LisH) motif profile. 40 72 IPR006594 GO:0005515
Lele22g1220 424 SMART Lish 40 72 IPR006594 GO:0005515
Lele22g1220 424 MobiDBLite consensus disorder prediction 107 121 - -
Lele22g1220 424 MobiDBLite consensus disorder prediction 150 174 - -
Lele22g1220 424 MobiDBLite consensus disorder prediction 107 135 - -
Lele22g1220 424 PANTHER TRANSCRIPTION ACTIVATOR MSS11 29 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1220 Lele-ChrLele22 11251615 11258043 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele22g1220 LisH 0.00012 CL0561