Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1199 ATGTCGAGCTGCAACATGGACGTTGGTTCTGAGCAACTATGCTATATACCCTGCAAATTTTGCAACATTGTTCTTGCGGTAAGCGTTCCATGCAGTAATATTTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTATGGTCTGTGAACATGGCCGCCGCATTTCAGTCCCTGTCATGGCCACAAGTTCAGGCTTCTGGGTTATCCAATAATCCAGAGTTTAGAATTGAGACTGGTTCGTCTTCAAGATGCGACAATAGGATTGCAATGCGAGCTCCCACCACACGTATTGCAACTGAGGAAAGGCCTGTGACTAGGCCTCCCGAGAAGAGGCAGCGAGTACCTTCTGCGTACAATCAGTTCATAAAAGAAGAGATTCAGAGGATCAAAGTCAATAACCCAGATATCAGTCACAGGGAAGCATTCAGTACAGCTGCAAAGAATTGGGCACATTTCCCTCACATTCATTTCGGGTTGATGCTGGAGGCCAATAATCAAGCCCGGATTGGGAATGGAATTCGGAGAAGCATTTAA 540 0.4648 MSSCNMDVGSEQLCYIPCKFCNIVLAVSVPCSNIFDIVTVRCGHCSNLWSVNMAAAFQSLSWPQVQASGLSNNPEFRIETGSSSRCDNRIAMRAPTTRIATEERPVTRPPEKRQRVPSAYNQFIKEEIQRIKVNNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQARIGNGIRRSI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1199 179 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
Lele22g1199 179 Pfam YABBY protein 10 161 IPR006780 GO:0007275
Lele22g1199 179 Gene3D High mobility group box domain 100 156 IPR036910 -
Lele22g1199 179 SUPERFAMILY HMG-box 105 154 IPR036910 -
Lele22g1199 179 FunFam axial regulator YABBY 5-like 99 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1199 Lele-ChrLele22 9949210 9953166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1199 5 172 C2C2-YABBY Transcription Factor Family AT2G26580 73.214 2.97e-86 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele22g1199 YABBY 1.7e-66 CL0114