Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1155 ATGGCGTGGGCCAATGGTGGTACTGGTAACTTCTCGGCCCAGAAGTCGGTTCGCCCGACTCGGCCTAGCTACGTTCCTCCTCACTGCAGGAACAATGGCATGCCTGGTTTCAACAACAATGTGAACTCATTAATGTCGCCAAATAATGGGTCAGCTCAGTCTGGTTTCGCTTCCTTCAACTCTTATAGTTCCAGACAAGCAAGGGGTGGTGCGAGTAACGGCCGTTTTGGTGGTCGTGGTCGTGGTGGTAGAGGCTGGAGGTTTGATCGACCGGAAGAGACTGATGAGTCGAACCATTACTCGAATCGAAACAGTTTTGGGATTCCTGATACGATCGACACTACAGAGAGTTTCGGTGAAGATGCCGATGTTGGTGGTGATATCAATTTTGACGCATACGAAGATATTCCGGTGGAAGTCAGTGGTTCCGACGTACCCCCACCGATCAATACCTTCGCAGAAATAGAGTTGAACGAGGGTTTGAGCAAGAATATCAAGCGATGCAAGTACGTCAAACCCACTCCGATTCAGCGTCGTGCGATTCCCATCGCTGTTGCCGGTCGCGACTTGATGGCTTGTGCTCAGACCGGGTCAGGGAAGACGGCGGCGTTTTGTTTCCCCATTATATCTGGGGTTTTGAAGGATCGTTCTAGGTTTTTGCCTACGGCTCGTGAAGGCTGGACTTCATATCCCACTGCGCTTATAATGTCACCAACTAGGGAGTTATCATGCCAGATTCATGATGAGGCCACGAAGTTCGCTTATCAGACTGGAGTGAAGATTGTTGCTGCTTATGGTGGGGCACCGATTTATCAGCAGCTTCGTAATTTACAAAAAGGGGTGGACATCTTAGTTGCAACTCCTGGGCGCCTAGTTGATATGATTGAGAGAGGTAGGGTTTCACTCACTCGAATAAAATTCCTTGCGCTTGATGAGGCAGATCGCATGTTGGACATGGGCTTTGAGCCTCAAATTCGGAAGATTGTTGAGCAAATGGATATGCCTCCACCAGGTGCTAGACAGACAATGCTCTTCAGTGCTACGTTCCCAGATGATATACAGAAGCTTGGGGCGGACTTTCTTTCGAACTACATATTCTTAGCAATTGGAAGAGTTGGTTCCAGCACTGAATTGATTGTACAGAAAGTTGAACTTGTTCAGGATATGGATAAAAGAAACCATCTTGTGGATCTTCTCCGTTCTCAAAGGGTAAATGGGTTCAATGGAAAGCAAGCTTTGACTCTAGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTGGAAAATTGGCTGTCGAGAAAAGGTTTTCAGGCTATTGCGATACATGGTGACAAAGTTCAAATGGAGAGGGAAAGAGCCTTGAGATCTTTCAAAAGTGGTGCTACTCCTATTCTGGTCGCCACCGATGTTGCTTCAAGAGGTTTAGACATACCACATGTGGCTCATGTTGTCAATTTCGACTTGCCAAAAGATATAGATGGCTATGTTCACAGAATTGGCCGAACTGGTCGTGCCGGAAAGTCTGGTTTTGCCACTGCTTTCTTCAGTGACCAAAACATCCCTCTTGCAAAGCCCCTTGCTGAACTCATGCAAGAAGCAAACCAAAAGGTTCCCTCTTGGCTCGCCCAATATGCAGAGAGTTCTTCATATGGCATCTGTAGAAGCAGCAAAAGGGGCCCATGGTCCGGTAATGGCAAGTATGGCGGCCATGACTTCAGAAATATAACTCAACCTGAAGAAGGGTATAACAACCACTATGATGATCCAGGTTTTGCAGAGAACTGTGGCACCATAACTGCAGCTTATGACATACCTAATGCTTGCAATGATTCTTATGGTATAGCAAACGCAGATCCTCCTACTATCTGCAATTACCATTACAATGCTGCTGCTGACACTTATTATGGAAGTGTCGGGCCAAATGGGTATGCATCTGTTGTTCCTACTGGATGGGACTAG 1959 0.4676 MAWANGGTGNFSAQKSVRPTRPSYVPPHCRNNGMPGFNNNVNSLMSPNNGSAQSGFASFNSYSSRQARGGASNGRFGGRGRGGRGWRFDRPEETDESNHYSNRNSFGIPDTIDTTESFGEDADVGGDINFDAYEDIPVEVSGSDVPPPINTFAEIELNEGLSKNIKRCKYVKPTPIQRRAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGVLKDRSRFLPTAREGWTSYPTALIMSPTRELSCQIHDEATKFAYQTGVKIVAAYGGAPIYQQLRNLQKGVDILVATPGRLVDMIERGRVSLTRIKFLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPDDIQKLGADFLSNYIFLAIGRVGSSTELIVQKVELVQDMDKRNHLVDLLRSQRVNGFNGKQALTLVFVETKRGADALENWLSRKGFQAIAIHGDKVQMERERALRSFKSGATPILVATDVASRGLDIPHVAHVVNFDLPKDIDGYVHRIGRTGRAGKSGFATAFFSDQNIPLAKPLAELMQEANQKVPSWLAQYAESSSYGICRSSKRGPWSGNGKYGGHDFRNITQPEEGYNNHYDDPGFAENCGTITAAYDIPNACNDSYGIANADPPTICNYHYNAAADTYYGSVGPNGYASVVPTGWD 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1155 652 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Lele22g1155 652 CDD DEADc_DDX3_DDX4 151 373 IPR044763 GO:0003724|GO:0005524
Lele22g1155 652 Pfam DEAD/DEAH box helicase 174 356 IPR011545 GO:0003676|GO:0005524
Lele22g1155 652 SMART ultradead3 169 382 IPR014001 -
Lele22g1155 652 Pfam Helicase conserved C-terminal domain 391 506 IPR001650 -
Lele22g1155 652 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 367 IPR014001 -
Lele22g1155 652 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 112 545 - -
Lele22g1155 652 MobiDBLite consensus disorder prediction 82 99 - -
Lele22g1155 652 CDD SF2_C_DEAD 379 515 - -
Lele22g1155 652 FunFam Probable ATP-dependent RNA helicase DDX4 114 369 - -
Lele22g1155 652 SMART helicmild6 425 506 IPR001650 -
Lele22g1155 652 Gene3D - 111 369 IPR027417 -
Lele22g1155 652 FunFam ATP-dependent RNA helicase RhlB 370 549 - -
Lele22g1155 652 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 545 IPR001650 -
Lele22g1155 652 MobiDBLite consensus disorder prediction 63 109 - -
Lele22g1155 652 Gene3D - 370 550 IPR027417 -
Lele22g1155 652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 522 IPR027417 -
Lele22g1155 652 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1155 Lele-ChrLele22 8878083 8881699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1155 132 542 Eukaryotic Initiation Factors Gene Family AT3G19760 31.796 1.11e-59 204