LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele22g1146	ATGGACGAAGATTTGCTTAAGCAAAACACCGATTGCGTCTATTTCTTGGCTTCACCTCTCACTTGCAAGAAGGGGGCTGATTGTGAGTATCGGCATAATGAAATTGCAAGGCTAAACCCAAGGGATTGCTGGTACTGGTTATCTGGGAACTGCCTTAATCCAACATGTGGTTTTAGACATCCTCCATTGGAAGGGCATACTGGAGTGCCATCTGAGCCTACACAATCTTCTTTACCTGCAAACAAGACAGTTCACTGTTATTTTTACTTCAATGGATTTTGTAATAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGATTATAGCTCTTTTCCTGGTAAGCCTGGGAAGAATGACTCTGGAAGCAATGATGCCCTGCCCCCAGAAAATAAAACATCATCTGGAAATGAAGCTGGTGCAGCAATAAAAACTGAGACATATCCTGATCCATCTGAAATTGCCCCAAACGCACGGCATAATTGTAAATTTGACCATGTTGAAGAAGATCCTCAGCAATCAGTACTAAAAAATGATAAACAGCAAAATACTTCACCAGACATATCTGCTTATGAATATAAAGAAGCCACTGTAATTAGGCCTGACTGTGTATATCCAGAGAAGGATTTTGTTCATAGCATTTCCCTTACATCCACTGACCGGAGCACAGACGAGGAAGTGCATAATCACGTGGAACCTGAGGAACGATTGGAATCGTCCCCTGGATTTGATGTTCTTGTTGACGATGAAATGGAGGGCCCGGCCTATGAGGATGATTCTGAATATTTACCAGTTGATAGGGAACACAGGGAATTGAATGGGCAGTACTTGCAGTATGAATTTAAAGACACTGTTGAGTATGATCCTGAATGCCCTGAAGCTGACATTTTGTATGAAGAGATGTATGATGGTTGCAGATTTATGGATGGTGATCATATTCTTGCTGATGACAGAAGTGCTTTTTCCAGAGAGAGAATCGTAGACTCTATATTGTCCAGGAAGAGGATTCGGATGCCACCTGAAATGACTGCTTGTGACAGGAACTTAGATCTACGAGACCATCTGAGGAGACGGGGGGAATTTAATGGTCGACCGTTTACAGGCTTTTTAAGAAGAAGTGAATCATCTTGTCTGGTGATTCAGAACCGAGAAAGGCTTAGAAGACATGGTTTTGATCCGCGGCTTAGTAGAAGGTTGACATCTGAGGTGGTATTCAACACTATAAACTCAAATGGAGAGTTTGAAACTCGTTCAATTTCTGATAGGCACAGGTTTCTTAGGCACCCTCTGCGACATTCACCACGGAAGCTGCAGCATTATAGAGAAAACCGGGGTAAACAGCAGTTTCTTCCATCTAAAATCTTCAGGAAACCATTTCCAAAGCGAAGGCGATATACTCTGGCATCTGTCGACAACGCATTTCACGGACCTAAGACTCTAGCAGAAATCAAAGAAGAGAAGGCGGCAGCCGCAGAAAGAGGGCATTTCAATGGTACTTCAGCTGACTTCCAGGATCCCAAACCTCTAAGTGAAATCCTCAAAGACAAGAGGTTGGATTGTGAATGA	1563	0.4293	MDEDLLKQNTDCVYFLASPLTCKKGADCEYRHNEIARLNPRDCWYWLSGNCLNPTCGFRHPPLEGHTGVPSEPTQSSLPANKTVHCYFYFNGFCNKGDRCSFLHGPDYSSFPGKPGKNDSGSNDALPPENKTSSGNEAGAAIKTETYPDPSEIAPNARHNCKFDHVEEDPQQSVLKNDKQQNTSPDISAYEYKEATVIRPDCVYPEKDFVHSISLTSTDRSTDEEVHNHVEPEERLESSPGFDVLVDDEMEGPAYEDDSEYLPVDREHRELNGQYLQYEFKDTVEYDPECPEADILYEEMYDGCRFMDGDHILADDRSAFSRERIVDSILSRKRIRMPPEMTACDRNLDLRDHLRRRGEFNGRPFTGFLRRSESSCLVIQNRERLRRHGFDPRLSRRLTSEVVFNTINSNGEFETRSISDRHRFLRHPLRHSPRKLQHYRENRGKQQFLPSKIFRKPFPKRRRYTLASVDNAFHGPKTLAEIKEEKAAAAERGHFNGTSADFQDPKPLSEILKDKRLDCE	520

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele22g1146	520	ProSiteProfiles	Zinc finger C3H1-type profile.	6	35	IPR000571	GO:0046872
	Lele22g1146	520	SMART	c3hfinal6	7	34	IPR000571	GO:0046872
	Lele22g1146	520	SMART	c3hfinal6	39	62	IPR000571	GO:0046872
	Lele22g1146	520	SMART	c3hfinal6	80	106	IPR000571	GO:0046872
	Lele22g1146	520	SUPERFAMILY	CCCH zinc finger	80	107	IPR036855	GO:0046872
	Lele22g1146	520	MobiDBLite	consensus disorder prediction	218	238	-	-
	Lele22g1146	520	Pfam	Zinc-finger containing family	7	63	IPR041686	-
	Lele22g1146	520	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	82	106	IPR000571	GO:0046872
	Lele22g1146	520	FunFam	Zinc finger CCCH domain-containing protein 17	1	63	-	-
	Lele22g1146	520	Gene3D	-	3	64	-	-
	Lele22g1146	520	Gene3D	-	72	171	-	-
	Lele22g1146	520	MobiDBLite	consensus disorder prediction	123	137	-	-
	Lele22g1146	520	ProSiteProfiles	Zinc finger C3H1-type profile.	37	63	IPR000571	GO:0046872
	Lele22g1146	520	MobiDBLite	consensus disorder prediction	489	520	-	-
	Lele22g1146	520	MobiDBLite	consensus disorder prediction	112	137	-	-
	Lele22g1146	520	ProSiteProfiles	Zinc finger C3H1-type profile.	80	107	IPR000571	GO:0046872
	Lele22g1146	520	PANTHER	ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING	1	517	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele22g1146	Lele-ChrLele22	8794138	8797276	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Lele22g1146		zf-CCCH_3	3.5e-11	CL0537

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele22g1146	22	8794138	8797276	Lele22g1146	22	8794138	8797276	ECH
	Lele22g1146	22	8794138	8797276	Lele23g0903	23	14376396	14379444	hybridization
	Lele22g1146	22	8794138	8797276	Lele24g1119	24	8956347	8959837	hybridization