Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1127 ATGCATTACCCGCATAATCAACTTCCTAATCACCAGTTAAAAAGTCTTACTCTCACAACTGCCTCTGCTTCTACCAGCAAAGGGGAAAATGGCTTTCTTTTTCGGCCTCGTGCTCGGAATAGTTGTGGGGCTCGCCGTGATTGTGGGGTAGCTTGGCTTAACTCACATCTTACGAAGATCTGGCCCTATGTTAACGAGGCTGCTTCTGAGCTAATAAAGACATCCGTGGAACCCGTTCTTGAACAATATAGACCCATGATTTTGGCCTCGCTTAAATTTTCCAAGTTTACTCTTGGTACAGTAGCACCCCAGTTTACAGGGGTGTCTATTATTGAGGATGAAGGGGGTGGTGGTGTTACAATGGAATTGGAAATGCAATGGGATGGGAATCAAAGTATTATACTTGATATTAAGACTCTAGTTGGTGTTTCACTACCAGTGCAGGTAAAAAATATTGGATTTACAGGCGTTTTCAGGTTGATTTTTAAGCCACTTGTTGATGAATTTCCAGGCTTTGGAGCTGTTTGTTTTTCTTTAAGGCAGAAGGGCACTCTGTCCTCCTCTGACATTGTTCGGTGCATACTAGAATCACATCCCATCTCATCTTTCATGAAGGTATCGATTTTATTGGTGGTGACATATCAACAATCCCTGGATTATATGAAGCAATTGAGGTTTGAGCAGCTACTATTGTTTGTTAATGATCACCCTTGTGCATCTGCTTCCTTGTGCAATTGCAATAATCTGGGGACAATTCGGGATGCTGTTGAAGATTCTATCACATGGCCCGTGAGAAAAGTTATACCTATCTTGCCTGGAGATTACAGATTCAAGTCATCTGATTTGATTGGATGTGCTCGTATCGATCTTAAGGAACTTCAGCCTGGTAAAGTTAAAGATGTGTTGTTGAACCTGGTGAAGGATTTGGAGATCCAAAGAGATAACAAGAACAGAGGGCAGCTTAACATTGCTGTCCAAGATTCATTGGGACTTGCATATGCTATTAAATGTGGCATACTTTTTCCGGAGGCTTGGCTTGGCTACACAAAAGCCCAGTGGTCTGGTATGACCCGGTTCAGCCTGATAAGACCAGAGAATGGGTTTTCCAATCCTTTCGCACCCGACTATATGACAACCTTGGAAAAGGTTATTAAAAGTTCAGCAAAAGGAACCGAAGCTCCTGATGATGAAAATTCTTTTTCACAAAAGAGAAAGGAGGTTATTGTTAGAGGTGTCCTTTCTGTTACTGTAATATCTGCTGAAGACTTGCCTCCTGCAGATCTGATGGGGAAAGCTGACCCTTATGTTGTTCTCACCATGAAGAAAACAGAAAATAAAAACAAAACCAGGGTTGTTAATGACAACTTGAATCCTGTTTGGAATCAGACGTTTGATTTTGTTGTTGAGGATGGATTACATGATATGCTAATTGTTGAAGTTTGGGACCACGACACATTCGGGAAGGATTATATGGGCAAATGCATAATGACACTTACTAGGGTCATAATGGAGGGGGAAGTGAAAGATCGTTTTGAGCTAGATGGTGCTAAATCTGGCTACTTGAATTTGCATCTCAAGTGGCTGCCGCAACCAATTTACCGTGATCATTGA 1611 0.4178 MHYPHNQLPNHQLKSLTLTTASASTSKGENGFLFRPRARNSCGARRDCGVAWLNSHLTKIWPYVNEAASELIKTSVEPVLEQYRPMILASLKFSKFTLGTVAPQFTGVSIIEDEGGGGVTMELEMQWDGNQSIILDIKTLVGVSLPVQVKNIGFTGVFRLIFKPLVDEFPGFGAVCFSLRQKGTLSSSDIVRCILESHPISSFMKVSILLVVTYQQSLDYMKQLRFEQLLLFVNDHPCASASLCNCNNLGTIRDAVEDSITWPVRKVIPILPGDYRFKSSDLIGCARIDLKELQPGKVKDVLLNLVKDLEIQRDNKNRGQLNIAVQDSLGLAYAIKCGILFPEAWLGYTKAQWSGMTRFSLIRPENGFSNPFAPDYMTTLEKVIKSSAKGTEAPDDENSFSQKRKEVIVRGVLSVTVISAEDLPPADLMGKADPYVVLTMKKTENKNKTRVVNDNLNPVWNQTFDFVVEDGLHDMLIVEVWDHDTFGKDYMGKCIMTLTRVIMEGEVKDRFELDGAKSGYLNLHLKWLPQPIYRDH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1127 536 SMART C2_3c 412 510 IPR000008 -
Lele22g1127 536 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 51 181 IPR039010 -
Lele22g1127 536 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 251 276 IPR045050 GO:0008289
Lele22g1127 536 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 46 235 IPR031468 GO:0008289
Lele22g1127 536 FunFam Extended synaptotagmin-2 391 531 - -
Lele22g1127 536 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 408 530 IPR035892 -
Lele22g1127 536 ProSiteProfiles C2 domain profile. 394 511 IPR000008 -
Lele22g1127 536 Gene3D C2 domain 395 529 IPR035892 -
Lele22g1127 536 CDD C2 413 510 - -
Lele22g1127 536 Pfam C2 domain 411 508 IPR000008 -
Lele22g1127 536 PRINTS C2 domain signature 476 484 IPR000008 -
Lele22g1127 536 PRINTS C2 domain signature 454 467 IPR000008 -
Lele22g1127 536 PRINTS C2 domain signature 428 440 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1127 Lele-ChrLele22 8476515 8487468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1127 411 529 C2H2 Transcription Factor Family AT4G05330 29.747 1.28e-09 58.2