Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1110 ATGGGTCGCGTACGTACGAAGACCGTGAAGAAATCGTCTCGACAAGTCATTGAGAAGTACTATTCTCGAATGACGTTGGATTTCCACACTAACAAGAAGATTCTTGAGGAGGTGGCTCTCATCCCTTCCAAGAGGCTCCGTAACAAGATCGCCGGCTTCTCTACACATCTCATGAAGAGGATCCAGAAGGGTCCTGTTCGCGGCATCTCCCTCAAGCTTCAGGAGGAGGAGCGCGAGCGTCGTATGGATTTTGTTCCTGATGTTTCTGCCATTAAGACTGATCAAATTGAAGTTGACAAGGAGACACTTGATATGCTTAATGCTCTTGGCATGAATGATATTCCCGGTCTTGTCCAGGTCGATCCCACACCTGCGCCGCAGGTCGGATTTGGCCGCGGCGGTTTTGGTGGCGGTGCTAGGAGTTATCCGTATGGTATCTCAGTTTGA 447 0.4989 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLNALGMNDIPGLVQVDPTPAPQVGFGRGGFGGGARSYPYGISV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1110 148 FunFam 40S ribosomal protein S17 1 62 - -
Lele22g1110 148 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lele22g1110 148 PANTHER 40S RIBOSOMAL PROTEIN S17 1 122 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lele22g1110 148 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lele22g1110 148 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Lele22g1110 148 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lele22g1110 148 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1110 Lele-ChrLele22 8166666 8167250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1110 1 133 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 84.444 1.53e-78 227