Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1079 ATGCCGGACGTGGAACCCTCTGGCACAGTCGATTTTTCCGACTTAGAGTCGTCTTCAAGTCTTTCTGATCATTTGCGGTCTTTATCTCTCAATGGAGTGCATAATCAGACGGACTCGGTTTCTGAAGACCGATATGCGGAAAAAGATCCGCGGAAAATTGCTAGGAAGTATCAATTGGAATTATGCAAGAAAGCTTTGGAGGAAAATATAATTGTGTATCTGGGGACAGGTTGTGGGAAGACTCACATTGCTGTGTTGCTTATGCATGAGATGGGGCACTTGATACGGAAGCCTCAGAAGAACATATGTGTTTTTCTTGCCCCTACAGTGGCATTAGTTATCCAGCAAGCAACTGTTATAGGAGAGTCTACGGATTTTAAGGTTGGGGTTTACTGTGGGAACTCAAAGCGCTTGAAAACTCATCATGATTGGGCACAAGAGATTGAGCAACATGAGGTTCTTGTTATGACCCCTCAGATACTATTGCGTTGCTTATATCACACTTTCATAAAGATGGAGATGATTTCTCTCTTAATTTTTGATGAATGTCATCACGCCCAAGTCAAAAGCGACCATCCTTATGCAGAAATCATGAAAGCCTTCTATAAACCGAAATCCACTAAGCTTCCCCGCATATTTGGCATGACTGCTTCTCCAGTTGTAGGGAAAGGTGCTTCTAGTAAAGAAAATCTATCGAAAAGCATCAATAGTCTTGAATGTTTGCTTGACTCAAAGGTATATTCGGCCTCACAAAAAGAAGAAGTGGAAACTTTTGTTGCCTCCCCTGAGGTTACTGTATATGATTATGGTCCTGGAGCCAATGGAACAACTAGTTTGTACATGAATTACTGTACCAAACTACAGGAGATTAAATGCGAGTGCATAGAAATCCTTCGAAGGAGTACGGAAGAGCACTTGAAACGGAGGAACACGAAAAGACTTCTGAACCGCATGCATGATAATGTGCTTTTCTGTCTGGAGAATCTTGGCATTTGTGGAGCATTGCAAGCTAGTCGTGTTCTTTTGAGTGGTGATCACTCAGAAAGGCTTGAGTTAGTGGAGGAGGAAGGAAGCTCAAGTGAATACTCTTTTTGTGACAAATACCTAGCACGGGTGTCTGAGTTCTTTAATTCTGAATGCATAAAAGGTGACCATGCGTCCGATCTCTATTCTGTGGACATTTTAAAAGAGCCTTTTTTCTCAAGAAAGCTTTTACGCCTCATTGGGATACTATCGTCATTTAGGCAACGACCAGATATGAAATGTATAGTTTTTGTAAATAGAATTGTTACTGCAAGATCCTTGTCATACATTCTACAACAGCTCAAAATTTTAGCACGTTGGAAAAGTGATTTTTTGGTAGGAGTTCATGCTGGAATAAAAAGTTTGTCACGAAAGGCCATGAACATCATTCTTGACAAGTTCCGCTGTGGAGAGTTGAACTTATTGGTTGCGACCAAAGTGGGTGAAGAAGGACTTGATATTCAGACATGCTGCCTTGTCATACGATTTGATCTTCCAGAAACTGTTGCGAGCTTTATACAATCAAGAGGTCGTGCACGTATGGCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATAAGAAGGATATGGATTTGATTAAATGTTTTGAGAAAGATGAAAGACGAATGAACAGGGAAGTTGATTTCCGCACATCCTATGATACACATATAATCCCTGAGGAAAGAATTTACAAAGTTGTATCATCTGGTGCTTCTGCCAGTTCTGGATATAGTGTCTTACTGCTTCACAACTATTGTTCGAAGCTTCCGCGCGATGAGTATTTTGACCCCAAGCCAAATTTTTTTTACTTTGATGATTTAGGGGGAACTGTCTGTCAGATAACATTGCCTTCCAATTCTCCCATAAATCAAATTGTTAGTACACCACATGATTCAATGGAAGCTGCTAAGAAGGCTGCTTGTTTGAAAGCAGTTGAGGAACTGCATAAATTAGGTTCTTTGAATGATTTTCTGTTGCCAAAGCAAGATGACGCAAACCCAGAGGAGGTTTCAGATTCTTCTGATTCAGATGAAAATGCAGATGACAAACGAGGAGAATTATATGAGATGCTAGTTCCTTCAGCATTTAGACGGGCTTGGACAACTTCAGATAATATTGTCCATCTTAACTCTTACCTTTTAAAATTTAGTCCCTCTCCAGATGATCGGGACTATAAAGAGTTTGGTTTATTTATGGTGACATGTCTTCCTATGGAGGCTGAGAAAATGGAACTTGATCTTCATCTTGCTCGTGGTAGAACTGTGATGACACAATTTGTTCCATTTGGTGTTATCAAGTTTGACAAAGCTGAGATTCAGATGGCACAGCTTTTTCAGGAGATGTCCCTAAAAATTATTCTTGATCGATCAGAATTTGTTCATGAATCTGTACCCTTGGGTAGGGCCGATGTCTTGCAAACAAGCACTTCAACCTTCTATCTTTTGCTTCCAGTCATAATGCAAGACTGTGAAAAGCCTATGACAGTAGATTGGATGAGCGTGAAAGCATGCCTTTCTTCACCAATATTTAGGCTCCCGGAACACAGTGTAACTCCAAAATTGTTTCCTGGGGATAGGAACCTGCAACTAGCTGATGGTTGTAGAAGTGCAAGAGATCTTGAGAATAGTTTAGTGTATGCTCCACATAAGAAGCTGTTTTATATTATTACTAATATTGTTTATGAAAAGAATGGACTGAGTACTTATAAAGGTTTGGACAGTTTAACCTATGTGGATCACTTTATCCGAAGGTTCTCCATTCATCTTAAATACCCTAAGCAACCGCTTCTCCGTGCAAAGCCACTATTTCATCTGCGCAACTTGCTTCACAACCGAAAGCAAGAGGGTACAGAAGCTCATGAACTGGAGGAGTATTTCATCCTTTTGCCTCCTGAGCTTTGCCAACTAAAAATTATAGGCTTCTCAAAAGATATTGGGAGTTCCCTATCTTTGTTACCATCAATCATGCATCGCCTTGGAAACTTGCTGGTTGCAATTGAACTCAAGCATCTGCTTTGTTCTTCCTTCCCTGAGGCAGATGAAGTTAGTGCAGAAAGAGTTTTAGAGGCACTCACCACTGAGAAATGTCAGGAGCGCCTTTCTCTTGAAAGACTTGAAGTTCTTGGTGATGCTTTCCTTAAATTTGCGGTAGCGCGCCATTTTTTTCTCATGAATGATAGCCTTCATGAAGGAGACCTTACAAGGAGGCGATCCAATGTTGTGAATAACTCCAATTTGTTCAAGATAGCTACTAAACACAATCTGCAGGTGTACATTCGTGATCAGGCATTTGATCCCTCTCAGTTCTTTGCATTAGGCCGTCCTTGCCTAAGAATTTGTGCTGAGGAAACCAAAGAGAGCATTCACTCTTGTTTAAATTCTCTAGATGAGCTGGGCCAGGAAAGATCAACTGAAGTTTGTTGCAACAAAAATCACCACTGGCTTCATCGAAAAACAGTTGCTGATGTCATTGAAGCTCTTATTGGAGCATTCATTGTTGACAGTGGCTTTAAAGCAGCAACTGCATTTCTTACATATCTTGGCATACAAGTTAAGTTTGAATCCTCACAGGTGGTCAATGCTTGCAGAGCAAGTGTAAGTTACATCCCTCTTTCCACACATATAGACGTTCCTTGCCTCGAAGATGAGTTAAAACATCACTTTGTCCATAAGGGTCTGCTTCTCCAAGCATTTGTACATCCCTCTTATAATAAGCATGGAGGTGGCTGCTATCAGCGATTGGAGTTTCTTGGAGATGCGGTCTTGGATTATTTGATTACGTCATACCTTTACTCAGCTTATCCAAAGCTAAAGCCTGGTCAATTAACAGACCTGAGATCGGTGTTAGTTAACAATAAGGCTTTTGCCTATGTTGCAGTGTTTAAAGGATTTCATAATTTCCTTTTATGTGATTCTAGTGGTCTGTCTGATACAATAGAAAAGTATGTGGACTACATTAAAGGATCTAAAGATCATATTGGTGTTCATGGAGGGCCAAAATGTCCTAAGGCCCTAGGTGACTTGGTAGAGTCTTGTGTTGGTGCCATTCTACTTGATTCTGGTTTCAATCTGAACAGTGTTTGGAAGATTACGACTTCATTCTTGGAACCCATTATGAAATTTTCGTCAGGCTTGCAGCTTAGTCCTATTAGGGACTTACAAGAACTTTGCCAATCACATAGTTTGGAGTTGCAGTTTCTGAGATCCAAAACAAGCAGAATGTTTTCCGTTGAAGCCAAAGTGACTGGGGAAGATGTTTCTGAAACTGCTTCAGCAACCAGCATGAATCAAAAAGAGGCTGCTAGAATTGCTTCACAACTAGTATTTTCTAAATTAAAGTCTAAGGGCTGGAAACCAAAGTCAAAATCTTTGGAAGAAGTTCTTAAATCAACCTTTAAGGAAGAAGGAAAACTTCTTGGCTATGATGAAACACCTATTGATATTACTGAAGCTGGCATCGTTGAGCCTATAGTGGTTAAGGGAGATCAATGCAGCAGTTTTGAAATAGAAATTTTCCCCCTTGGTGGTGACGAGGTAGTCGACAAATATCCCCCACATTCAACAACTGTTAGCCAACAGCTTCCATCTTCTTCCATCATAGGGAAACTAGGTGATACAATTGAAGATCATAATCGGGACTGTGACTCACTGACGGCAGGTTGTTTGGTCAAAGGAACATCAAGATCGCGATTGTATGAATTTTGTGCTGCCAATTGCTGGAAGCCTCCTTCCTTTGAATTCTGCAAAGAGGAGGGACCAGACCATCTGAAGTTATTTACTTGCAAGGTGACCTTGGAGATAGAAGAGGCTTCAAATATGATTTTGGAGTGTGTTGGTGCTCCTCGACCGAAGAAGAAAGAAGCAGGAGAGTCCGCAGCTGAGGGCGCATTTTGGTACCTGGAAAAGGAAGGTTACTTACTTGATGGTAAGTGA 4959 0.4081 MPDVEPSGTVDFSDLESSSSLSDHLRSLSLNGVHNQTDSVSEDRYAEKDPRKIARKYQLELCKKALEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNICVFLAPTVALVIQQATVIGESTDFKVGVYCGNSKRLKTHHDWAQEIEQHEVLVMTPQILLRCLYHTFIKMEMISLLIFDECHHAQVKSDHPYAEIMKAFYKPKSTKLPRIFGMTASPVVGKGASSKENLSKSINSLECLLDSKVYSASQKEEVETFVASPEVTVYDYGPGANGTTSLYMNYCTKLQEIKCECIEILRRSTEEHLKRRNTKRLLNRMHDNVLFCLENLGICGALQASRVLLSGDHSERLELVEEEGSSSEYSFCDKYLARVSEFFNSECIKGDHASDLYSVDILKEPFFSRKLLRLIGILSSFRQRPDMKCIVFVNRIVTARSLSYILQQLKILARWKSDFLVGVHAGIKSLSRKAMNIILDKFRCGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMAQSEYAFLVDSGNKKDMDLIKCFEKDERRMNREVDFRTSYDTHIIPEERIYKVVSSGASASSGYSVLLLHNYCSKLPRDEYFDPKPNFFYFDDLGGTVCQITLPSNSPINQIVSTPHDSMEAAKKAACLKAVEELHKLGSLNDFLLPKQDDANPEEVSDSSDSDENADDKRGELYEMLVPSAFRRAWTTSDNIVHLNSYLLKFSPSPDDRDYKEFGLFMVTCLPMEAEKMELDLHLARGRTVMTQFVPFGVIKFDKAEIQMAQLFQEMSLKIILDRSEFVHESVPLGRADVLQTSTSTFYLLLPVIMQDCEKPMTVDWMSVKACLSSPIFRLPEHSVTPKLFPGDRNLQLADGCRSARDLENSLVYAPHKKLFYIITNIVYEKNGLSTYKGLDSLTYVDHFIRRFSIHLKYPKQPLLRAKPLFHLRNLLHNRKQEGTEAHELEEYFILLPPELCQLKIIGFSKDIGSSLSLLPSIMHRLGNLLVAIELKHLLCSSFPEADEVSAERVLEALTTEKCQERLSLERLEVLGDAFLKFAVARHFFLMNDSLHEGDLTRRRSNVVNNSNLFKIATKHNLQVYIRDQAFDPSQFFALGRPCLRICAEETKESIHSCLNSLDELGQERSTEVCCNKNHHWLHRKTVADVIEALIGAFIVDSGFKAATAFLTYLGIQVKFESSQVVNACRASVSYIPLSTHIDVPCLEDELKHHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSVLVNNKAFAYVAVFKGFHNFLLCDSSGLSDTIEKYVDYIKGSKDHIGVHGGPKCPKALGDLVESCVGAILLDSGFNLNSVWKITTSFLEPIMKFSSGLQLSPIRDLQELCQSHSLELQFLRSKTSRMFSVEAKVTGEDVSETASATSMNQKEAARIASQLVFSKLKSKGWKPKSKSLEEVLKSTFKEEGKLLGYDETPIDITEAGIVEPIVVKGDQCSSFEIEIFPLGGDEVVDKYPPHSTTVSQQLPSSSIIGKLGDTIEDHNRDCDSLTAGCLVKGTSRSRLYEFCAANCWKPPSFEFCKEEGPDHLKLFTCKVTLEIEEASNMILECVGAPRPKKKEAGESAAEGAFWYLEKEGYLLDGK 1652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1079 1652 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 587 677 IPR005034 GO:0016891
Lele22g1079 1652 Pfam Ribonuclease III domain 1254 1363 IPR000999 GO:0004525|GO:0006396
Lele22g1079 1652 Pfam Ribonuclease III domain 1045 1178 IPR000999 GO:0004525|GO:0006396
Lele22g1079 1652 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 403 573 IPR001650 -
Lele22g1079 1652 Pfam Dicer dimerisation domain 587 672 - -
Lele22g1079 1652 Gene3D - 396 558 IPR027417 -
Lele22g1079 1652 FunFam Endoribonuclease dicer-like 1 1213 1384 - -
Lele22g1079 1652 SUPERFAMILY dsRNA-binding domain-like 1570 1646 - -
Lele22g1079 1652 Coils Coil 1392 1412 - -
Lele22g1079 1652 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1568 1644 IPR014720 -
Lele22g1079 1652 Pfam DEAD/DEAH box helicase 56 217 IPR011545 GO:0003676|GO:0005524
Lele22g1079 1652 Gene3D - 52 278 IPR027417 -
Lele22g1079 1652 ProSitePatterns Ribonuclease III family signature. 1254 1262 IPR000999 GO:0004525|GO:0006396
Lele22g1079 1652 ProSiteProfiles PAZ domain profile. 849 980 IPR003100 GO:0005515
Lele22g1079 1652 MobiDBLite consensus disorder prediction 668 693 - -
Lele22g1079 1652 CDD RIBOc 1235 1385 IPR000999 GO:0004525|GO:0006396
Lele22g1079 1652 Pfam Helicase conserved C-terminal domain 406 521 IPR001650 -
Lele22g1079 1652 Gene3D paz domain 870 988 - -
Lele22g1079 1652 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1390 1456 IPR014720 -
Lele22g1079 1652 SUPERFAMILY RNase III domain-like 1219 1382 IPR036389 GO:0004525|GO:0006396
Lele22g1079 1652 SMART riboneu5 1234 1386 IPR000999 GO:0004525|GO:0006396
Lele22g1079 1652 SMART riboneu5 1027 1198 IPR000999 GO:0004525|GO:0006396
Lele22g1079 1652 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 536 IPR027417 -
Lele22g1079 1652 Gene3D - 1575 1645 - -
Lele22g1079 1652 SMART PAZ_2_a_3 859 1006 IPR003100 GO:0005515
Lele22g1079 1652 SMART helicmild6 440 523 IPR001650 -
Lele22g1079 1652 FunFam Endoribonuclease dicer-like 1 582 678 - -
Lele22g1079 1652 SMART DRBM_3 1569 1643 IPR014720 -
Lele22g1079 1652 SMART DRBM_3 1391 1455 IPR014720 -
Lele22g1079 1652 Gene3D Ribonuclease III domain 1214 1385 IPR036389 GO:0004525|GO:0006396
Lele22g1079 1652 Gene3D Ribonuclease III domain 1024 1192 IPR036389 GO:0004525|GO:0006396
Lele22g1079 1652 CDD DEXHc_dicer 52 250 - -
Lele22g1079 1652 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 237 IPR014001 -
Lele22g1079 1652 PANTHER DICER-RELATED 67 1461 - -
Lele22g1079 1652 Gene3D Dicer dimerisation domain 583 681 IPR038248 -
Lele22g1079 1652 Pfam PAZ domain 879 1001 IPR003100 GO:0005515
Lele22g1079 1652 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1569 1643 - -
Lele22g1079 1652 ProSiteProfiles Ribonuclease III family domain profile. 1219 1363 IPR000999 GO:0004525|GO:0006396
Lele22g1079 1652 SUPERFAMILY RNase III domain-like 1027 1192 IPR036389 GO:0004525|GO:0006396
Lele22g1079 1652 SUPERFAMILY PAZ domain 876 978 IPR036085 GO:0005515
Lele22g1079 1652 FunFam Endoribonuclease dicer-like 1 394 557 - -
Lele22g1079 1652 ProSiteProfiles Ribonuclease III family domain profile. 1031 1178 IPR000999 GO:0004525|GO:0006396
Lele22g1079 1652 SMART ultradead3 50 247 IPR014001 -
Lele22g1079 1652 FunFam Endoribonuclease dicer-like protein 49 289 - -
Lele22g1079 1652 CDD DSRM_DCL_plant 1575 1644 - -
Lele22g1079 1652 SUPERFAMILY dsRNA-binding domain-like 1345 1455 - -
Lele22g1079 1652 CDD RIBOc 1030 1197 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1079 Lele-ChrLele22 7801922 7836654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1079 421 520 Eukaryotic Initiation Factors Gene Family AT3G19760 28.000 4.23e-06 49.3