Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1040 ATGGTGGCTTTGCCGGCGGTGGCAATGGTGAAAAGCACCTTGATTGTGGGGAATGATGATGTTATTCACTTGGACGACGACCAAGGAGGCGGTGGTGTAATGGAGTTACAACTCCTGCTGCAGTTACAACGCTTCATACAGGCGCGTGTTGCAACGCACTGCCGAACACGCATTTTTTATTTTCTTCCGCCATACCCAAAATTTGAGCCTCCGTTACTACAACACTGTTTTCGTCGGGACTCGTCTTTCTCTAACGTTACGCTCATGGAGTTCAACTTTCTTGGTAATGATCTCAAGACGCCGTCTCTTCAATTACCATCTCCGATGCAAAGCCACTTCTCCGAGGCCTCCTTGTTGCGAGGTGGTTGTCCGAACACCGAGCAAATACTGAATGCGGACGTCGCCGGCGAAGATAAAGATATATTACTGCGGAAGCTGGAGAAAGAGCAAATAAGACGAGAGATAATCTCCGGCGAGATAGCGAGGAGGCGAATGCTGGAGGAGGAAGTAAGAATAGAACTGATGCTGGAGAGAGAAGTGGCATTCCGAAGGAGTTTGGGAGAGAAATTCTTGCTTGATGAGCAAGTGGCGATGGGGTTGATGCCTCAAATAAAACCTGATCCAAAGATTAACATGGATAAATTGATCATGCTGGCTCAGCCAAACCCAGACATTTATAAAGAAAAGCGGAAAGCTGTAACACAAGAGGCTGATGACGATGATACGAAGCATTCTCCAGTTGTCGTGAAGAAAAAACCGAAAGATGACTGGAACTGTGCACTATGTAATGTTAGTGTCACAAGTGAGAAAGCTTTGAACGAACACCTTCAAGGTAAAAAGCACAAGGCCAAGGAATCTGCAAGAACGAGAACGCAGAAGAGTCCTAGCCCGTCATCTACATCGAAGAATAGCGAACAGTCTCAGAAGCCTACTGAAACCATTGTTACTACTACAACTTCAGATCTGATGGAAGCAAAAGCTGATGCTCAAGCTCAACCTGAAGTGACCATGGTAGACACAAATCAGACAGTGGTGGCAGGCAAAGATCTCTTGGGAGTCAAAACCAAAGATGAGGAGATTGTGGAGAAAATTCAAAACACACAAGATTCAGAGAAGCAAAATGTGACTGGATCAGAACAGCAGGTAAGAATGCCAGATGCAGTGAACAAAGGATTCAAGTTTTGGTGTGAACTCTGCCATGTTGGATCTTCCTCTGTGGTTGTGATGGAGAACCATAAGAGGGGGAGAAAACACACCAACCGATTAAAGAGATCGCGTCAAAATGATGAGAATGCTCCTCCCACATCTGCTGCAGTACCAGAGGCTACTCCATTGTCGACAAAAGATGCATAA 1353 0.4582 MVALPAVAMVKSTLIVGNDDVIHLDDDQGGGGVMELQLLLQLQRFIQARVATHCRTRIFYFLPPYPKFEPPLLQHCFRRDSSFSNVTLMEFNFLGNDLKTPSLQLPSPMQSHFSEASLLRGGCPNTEQILNADVAGEDKDILLRKLEKEQIRREIISGEIARRRMLEEEVRIELMLEREVAFRRSLGEKFLLDEQVAMGLMPQIKPDPKINMDKLIMLAQPNPDIYKEKRKAVTQEADDDDTKHSPVVVKKKPKDDWNCALCNVSVTSEKALNEHLQGKKHKAKESARTRTQKSPSPSSTSKNSEQSQKPTETIVTTTTSDLMEAKADAQAQPEVTMVDTNQTVVAGKDLLGVKTKDEEIVEKIQNTQDSEKQNVTGSEQQVRMPDAVNKGFKFWCELCHVGSSSVVVMENHKRGRKHTNRLKRSRQNDENAPPTSAAVPEATPLSTKDA 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1040 450 SUPERFAMILY beta-beta-alpha zinc fingers 251 287 IPR036236 -
Lele22g1040 450 MobiDBLite consensus disorder prediction 411 450 - -
Lele22g1040 450 Pfam Zinc-finger of C2H2 type 394 418 - -
Lele22g1040 450 Pfam Zinc-finger of C2H2 type 257 281 - -
Lele22g1040 450 ProSitePatterns Zinc finger C2H2 type domain signature. 259 281 IPR013087 -
Lele22g1040 450 SMART c2h2final6 394 418 IPR013087 -
Lele22g1040 450 SMART c2h2final6 257 281 IPR013087 -
Lele22g1040 450 Gene3D Classic Zinc Finger 363 427 - -
Lele22g1040 450 Gene3D Classic Zinc Finger 230 288 - -
Lele22g1040 450 PANTHER OS06G0651300 PROTEIN-RELATED 138 431 - -
Lele22g1040 450 SMART ZnF_U1_5 391 425 IPR003604 GO:0003676|GO:0008270
Lele22g1040 450 SMART ZnF_U1_5 254 288 IPR003604 GO:0003676|GO:0008270
Lele22g1040 450 MobiDBLite consensus disorder prediction 274 313 - -
Lele22g1040 450 MobiDBLite consensus disorder prediction 290 313 - -
Lele22g1040 450 SUPERFAMILY beta-beta-alpha zinc fingers 384 426 IPR036236 -
Lele22g1040 450 MobiDBLite consensus disorder prediction 230 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1040 Lele-ChrLele22 7396196 7400717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1040 257 449 C2H2 Transcription Factor Family AT2G19380 27.136 2.87e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1040 22 7396196 7400717 Lele22g1040 22 7396196 7400717 ECH
Lele22g1040 22 7396196 7400717 Lele24g1013 24 7465635 7467792 hybridization