Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1033 ATGGAAGCCAGCGCTGGACTCGTCGCTGGGTCTCACAACCGCAACGAGCTCGTCGTTATTCACGGCCATGAAGAGCCGAAGCCTTTGAAGAATTTGGATGGCCAGGTCTGTGAGATATGCGGCGACGACGTAGGTCTCACCGTGGACGGCGACTTGTTTGTCGCCTGCAACGAGTGTGGTTTCCCTGTTTGCCGTCCCTGCTATGAATATGAACGAAGAGAAGGCAGCCAACTCTGCCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGAAGCCCGAGGGTGGAGGGAGACGAAGATGAGGAGGACGTGGATGACATTGAACATGAATTCAAAATCTCAGCAGACGACAAGAACAAGCATAACCATATGGCAGAGGCCATGTTGCATGGCAAGATGAGCTATGGAAGAGGCCCTGAAGATGACGACAATGCTCAGTTCCCTCCCGTCATCGCCGGAAACCGATCCCGTCCAGTGAGCGGAGAATTCCCAATAGCATCTCATGTTTACGGTTATGGAGATCAGATGTTATCCTCTTCTCTGCACAAACGCGTCCATCCTTATCCAGTTTCTGAACCTGGAAGTGCAAGAGGGGACGAGAAGAACGAGGATGGGTGGAAAGATAGAATGGATGATTGGAAACTGCAGCAAGGAAACTTGGGGCCTGAACCTGATGAAGATCCAGAGGCAGCTTCGTTGGATGAAGCGAGGCAGCCATTGTCGAGGAAGGTGCCAATAGCATCGAGCAAGATTAATCCGTATAGAATGGTGATAGTGGCACGTCTTGTGATTCTTGCATTCTTCCTGAGATATAGAATTATGAACCCGGTTCATGACGCCATAGGGCTGTGGCTCACCTCCATTATATGTGAAATCTGGTTTGCTTTCTCCTGGATCCTTGATCAGTTCCCTAAATGGTTCCCCATTGATCGTGAGACCTACCTCGATCGTCTTTCCATCAGGTATGAAAGAGAAGGAGAGCCGAATATGCTGGCACCGGTGGATGTGTTTGTGAGTACGGTGGATCCGATGAAGGAACCGCCATTAGTGACGGCGAACACGATTCTGTCGATATTAGCGATGGATTATCCGGTGGATAAGATATCATGCTACATATCAGACGATGGTGCTTCGATGTGCACGTTCGAAGCACTTTCAGAAACAGCAGAATTTGCGAAGAAGTGGGTTCCGTTCTGTAAAAAATTCAGCATTGAGCCTCGAGCTCCTGAGATGTACTTCTCTGAGAAGATCGATTACTTGAAGGATAAGGTTCAGCCCACTTTCGTCAAGGAGCGTCGAGCCATGAAGAGAGAATACGAAGAGTTCAAGGTGAGAGTGAATGCACTTGTGGCGAAGGCCCAGAAGGTTCCAGCTGGAGGATGGATAATGCAGGATGGGACTCCATGGCCAGGCAACAACACCAAGGATCATCCTGGTATGATCCAAGTCTTTCTCGGTCACAGTGGTGGCTGCGACACCGACGGCAACCTTCTTCCTCGTCTCGTTTATGTCTCCAGAGAGAAACGGCCTGGTTTTGCTCACCACAAGAAAGCCGGCGCCATGAATGCTCTCGTTCGCGTCTCTGCTGTTCTCACAAATGCCCCTTTTATGCTCAATTTGGATTGTGATCACTACCTTAATAACAGCAAGGCCGTCCGAGAGGCCATGTGCTTCTTGATGGATCCCCAAACTGGGAAAAAAGTCTGCTATGTCCAATTCCCTCAGAGATTCGATGGCATTGACAGGCACGATCGTTATGCCAACAGGAACACCGTCTTCTTCGACATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTGGGGACTGGGTGTGTGTTCAGGAGGCAAGCTTTGTACGGATACAGTCCTCCAAAGGGTCCTAAACGCCCCAAGATGGTAAGTTGTGATTGCTGTCCATGTTTCGGACGCCGCAGGAAGCAAAAGTATGAGAAGGATGGTGCAAATGCAGAGTCTGCAATGCTGCAACAAGGAATGGAAGATGATAAAGAGTTGCTCATGTCTCAGATGAATTTTGAGAAGAAATTTGGGCAATCATCTATTTTTGTGACTTCAACTTTGATGGAAGAAGGTGGTGTGCCTCCTTCCTCAAGCCCATCAGCCCTGCTCAAAGAAGCCATTCATGTCATAAGTTGTGGCTATGAGGATAAAACCGAATGGGGAACTGAGCTGGGTTGGATCTATGGATCTATTACAGAGGATATCCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGATCTATTTACTGCAATCCAAAGAGGCCCGCATTCAAGGGTACAGCTCCAATCAACTTGTCAGATAGGCTGAACCAGGTGCTTCGTTGGGCGCTGGGTTCTATTGAGATCTTCTTCAGTCCCCATTGCCCTGCATGGTATGGCTACAAGGGTGGCAACAAGCTCAAGTGGCTAGAGAGATTCGCCTATGTCAACACCACTGTCTACCCCTTCACCTCCCTCCCTCTACTTGCCTACTGTATTCTTCCTGCTATTTGCTTGCTCACTGACAAGTTCATCATGCCACCGATAAGCACTTTTGCCGGTTTGTACTTTGTTGCTTTGTTCTCTTCCATCATCGCGACAGGCCTGCTTGAGTTGAAATGGAGTGGAGTGAGCATAGAGGAATGGTGGAGGAATGAGCAATTCTGGGTCATTGGTGGTGTATCAGCACATCTATTTGCTGTCATACAAGGTCTTTTGAAGGTGCTAGCCGGAATCGACACGAACTTTACCGTTACATCGAAGGCAGCAGATGATGAGGAATTCGGAGAATTATACACCTTTAAATGGACCACTCTCCTGATCCCACCAACCACTGTACTCATCATCAACATTGTTGGTGTTGTTGCTGGAATCTCAGATGCAATCAACAATGGCTACCAATCTTGGGGACCCCTATTTGGAAAACTCTTCTTCTCCTTCTGGGTTATTGTTCATCTCTACCCGTTCCTTAAAGGTTTAATGGGCAGACAAAACAGAACACCCACCATTGTTGTGATTTGGTCAGTGCTTTTGGCTTCTATTTTCTCTCTACTTTGGGTGAGAATTGACCCATTTGTGATGAAAACTAAGGGGCCTGATACCAAGATGTGTGGAATCAACTGCTGA 3135 0.481 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFKISADDKNKHNHMAEAMLHGKMSYGRGPEDDDNAQFPPVIAGNRSRPVSGEFPIASHVYGYGDQMLSSSLHKRVHPYPVSEPGSARGDEKNEDGWKDRMDDWKLQQGNLGPEPDEDPEAASLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRIMNPVHDAIGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYISDDGASMCTFEALSETAEFAKKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPAGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGCDTDGNLLPRLVYVSREKRPGFAHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYLNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYSPPKGPKRPKMVSCDCCPCFGRRRKQKYEKDGANAESAMLQQGMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPSALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCNPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSPHCPAWYGYKGGNKLKWLERFAYVNTTVYPFTSLPLLAYCILPAICLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKMCGINC 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1033 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Lele22g1033 1044 MobiDBLite consensus disorder prediction 196 214 - -
Lele22g1033 1044 FunFam Cellulose synthase 451 625 - -
Lele22g1033 1044 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Lele22g1033 1044 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 495 625 IPR029044 -
Lele22g1033 1044 Coils Coil 432 452 - -
Lele22g1033 1044 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Lele22g1033 1044 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 237 1011 - -
Lele22g1033 1044 MobiDBLite consensus disorder prediction 185 237 - -
Lele22g1033 1044 SUPERFAMILY Nucleotide-diphospho-sugar transferases 347 824 IPR029044 -
Lele22g1033 1044 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Lele22g1033 1044 Pfam Cellulose synthase 334 1038 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lele22g1033 1044 FunFam Cellulose synthase 19 110 - -
Lele22g1033 1044 SUPERFAMILY RING/U-box 21 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1033 Lele-ChrLele22 7347163 7353162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1033 1 1044 Cell Wall Biosynthesis AT5G17420 85.263 0.0 1833