Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1014 ATGGCGAAACTATCACAACTCAAGAACAATGCATGCAGCCTTATCAACAACAACAATAACAACCTTGGAGTCACTGTGCCCACCAAGGTTAAACGAACAAGAAGAAGTGTCCCCAGAGACTCCCCTCCACAACGTAGCTCTATATACCGAGGAGTCACAAGGCACCGGTGGACTGGCCGGTATGAAGCTCACTTGTGGGACAAGAATTGTTGGAACGAGTCGCAGAACAAGAAAGGGAGACAAGGTGCTTATGACGATGAAGAAGCAGCAGCACATGCTTATGATTTAGCAGCATTGAAGTACTGGGGTCAAGACACAATCCTTAACTTTCCGTTGGCAAAGTACCAGAACGAACTGAAAGAAATGGAGGGCCAATCAAGGGAAGAGTATATTGGATCGTTAAGGAGGAAAAGCAGTGGTTTTTCCCGGGGAGTTTCTAAATACAGAGGCGTTGCCAGGCATCATCATAATGGAAGATGGGAAGCTCGGATTGGCAGAGTTTTTGGCAATAAATATCTCTATCTTGGTACTTATGCTACTCAAGAAGAAGCTGCCACGGCTTATGATATGGCGGCTATAGAACACCGTGGGCTTAACGCCGTCACCAACTTCGATCTCAGCCGTTATATAAAGTGGCTTAAGCCTAATTCAAACGGCAACAATACTATTAATCTTAGTACTGATCAATCTAACTGCGACCCTAACGAAGAAGAAGGCCTGGAAATTGATGCTTATTATGTAATACGTAAGGAAGATGATGACGACAATGATGCTGATGAGGGACAGGGGCAAGTCAAATTACTCGGTTTATTTTTTTGTAGTTATGTAAAGAAAATAAAGAATGTCCAAGTGGGGCACCAAGAAAAATAA 870 0.4356 MAKLSQLKNNACSLINNNNNNLGVTVPTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQDTILNFPLAKYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEHRGLNAVTNFDLSRYIKWLKPNSNGNNTINLSTDQSNCDPNEEEGLEIDAYYVIRKEDDDDNDADEGQGQVKLLGLFFCSYVKKIKNVQVGHQEK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1014 289 Pfam AP2 domain 48 103 IPR001471 GO:0003700|GO:0006355
Lele22g1014 289 Pfam AP2 domain 146 196 IPR001471 GO:0003700|GO:0006355
Lele22g1014 289 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Lele22g1014 289 ProSiteProfiles AP2/ERF domain profile. 48 111 IPR001471 GO:0003700|GO:0006355
Lele22g1014 289 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Lele22g1014 289 SMART rav1_2 48 117 IPR001471 GO:0003700|GO:0006355
Lele22g1014 289 Gene3D AP2/ERF domain 48 113 IPR036955 GO:0003700|GO:0006355
Lele22g1014 289 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Lele22g1014 289 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lele22g1014 289 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Lele22g1014 289 SUPERFAMILY DNA-binding domain 47 112 IPR016177 GO:0003677
Lele22g1014 289 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Lele22g1014 289 FunFam AP2-like ethylene-responsive transcription factor 47 113 - -
Lele22g1014 289 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Lele22g1014 289 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 24 226 - -
Lele22g1014 289 FunFam AP2-like ethylene-responsive transcription factor 146 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1014 Lele-ChrLele22 7215600 7218340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1014 133 220 AP2-EREBP Transcription Factor Family AT1G72570 38.144 1.21e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele22g1014 AP2 2.5e-09 CL0081