Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0988 ATGGGAAGACGAAGAAGAACTCTAGCACAACTTAAAAACGAAGCCTTTGAGCCTCCTCCTTCAGAACAACCACCACCGTTCTATCTCTATCAGCCACATCTTCCTTCTTCATCTTCTTCACCACCAAATTTTTTATCTGATACCAATGGTTTCTTGAATTTAAACGACAAGGTAAGTCCAAGCATGCTACTTGTCATCATAATTCTGGCCATTGTGTTCTTTATTTCTGGGTTGATTCACCTGTTAGTTAGATTCCTTTGGAGACCCAGAGAACCAGATGATTTGGACAATGTGTCTGCTCTTCAAGGTCAATTACAGCAACTGTTTCATCTTCATGATGCTGGCGTTGACCAGTCTTTCATAGATAACACCCTCCCTGTGTTCCATTACAAAGCAATCATAGGATTGAAAGACCCATTTGATTGTGCTGTGTGCTTGTGTGAATTTGAAGCTGATGATAAACTCAGATTGTTACCCAAATGCAGCCATGCTTTTCACATGGAATGCATTGATACTTGGCTCTTGTCTCACTCAACTTGCCCTCTCTGTAGAGCTAGCTTGCTCTCTGCTGATTTCTCTCCCACCACAAACAACTCTTCTTCTTATTCTTCTCCTTTCGTCTTCGTTCTGGAATCTGGGAGTGAAAGTTCCAGAGAGATTATTGTTCCAGAAAGAGACAGTAGGACCAGTTCTGTGATTGCAGATAACGAACATGTAGATTTGTCACACAAATCTGTTGATTTGAGTTCAGATTCTGGTAATCCTGTTGGGGAATCACCTGAGAAAGTGGTCACTGTGAAGCTGGGAAAGTTCAGGAATGTGGACCGTGTTGCCGGTGAAGGAAGAAGCAGTGAAGCAGACATGGGAGGAGAAGAAGCTAGAAGGTGTCTTTCAATGGGGTCATTTGCTTATGTTATGGACGAGAATTCTTCACTTCAGCTACCAGTAAGAGCGACGATGAAGAAGCAATCAAGTAAGAAACCTGCTTTACCTTTAACACCAGGACGAAGGATTGCCATGTCAGAATGTGATTGTGAATCCACGAGAGATTTCAAGTTCACAGGTTTTGAAGCAGTGAAAGGTGTTGATGAGAAGAATTCTTCTGAAACTGCAAGTATTGAGGGAAGCAGAAAAGAGAGCTTTTCAGTTTCAAAGATTTGGCTCCGGGGAAAGAAAGAGAAGCCACAAGCCATGGCTGATGATTCTTCCTCAAGGAGGGCTGTTTCGTTTCGATTTGCAGCAGCAAGGGATGATGATGATGATGATTCGAAGGAGAAGAATCAGAAATCTGAGATTGTGGAGATTGAGAATGATGATGAAAACCAGAGCTGTTACAGTGTGGATTCTCAGGGCAGAGCACCGTCTTCTGCAAGAAGAACTCTGCTTTGGCTCACCGGGAAACAGAACAAGGTTGTTCATTCATCTTATGATTCAAACTTGTAG 1443 0.4262 MGRRRRTLAQLKNEAFEPPPSEQPPPFYLYQPHLPSSSSSPPNFLSDTNGFLNLNDKVSPSMLLVIIILAIVFFISGLIHLLVRFLWRPREPDDLDNVSALQGQLQQLFHLHDAGVDQSFIDNTLPVFHYKAIIGLKDPFDCAVCLCEFEADDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLSADFSPTTNNSSSYSSPFVFVLESGSESSREIIVPERDSRTSSVIADNEHVDLSHKSVDLSSDSGNPVGESPEKVVTVKLGKFRNVDRVAGEGRSSEADMGGEEARRCLSMGSFAYVMDENSSLQLPVRATMKKQSSKKPALPLTPGRRIAMSECDCESTRDFKFTGFEAVKGVDEKNSSETASIEGSRKESFSVSKIWLRGKKEKPQAMADDSSSRRAVSFRFAAARDDDDDDSKEKNQKSEIVEIENDDENQSCYSVDSQGRAPSSARRTLLWLTGKQNKVVHSSYDSNL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0988 480 CDD RING-H2_PA-TM-RING 141 184 - -
Lele22g0988 480 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 55 387 - -
Lele22g0988 480 MobiDBLite consensus disorder prediction 439 456 - -
Lele22g0988 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 191 IPR013083 -
Lele22g0988 480 SMART ring_2 142 183 IPR001841 -
Lele22g0988 480 MobiDBLite consensus disorder prediction 412 436 - -
Lele22g0988 480 Pfam Ring finger domain 141 184 IPR001841 -
Lele22g0988 480 SUPERFAMILY RING/U-box 123 189 - -
Lele22g0988 480 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Lele22g0988 480 MobiDBLite consensus disorder prediction 1 32 - -
Lele22g0988 480 MobiDBLite consensus disorder prediction 412 456 - -
Lele22g0988 480 FunFam RING-H2 finger protein ATL46 103 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0988 Lele-ChrLele22 6939760 6941202 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0988 53 475 C3H Transcription Factor Family AT2G18650 49.091 7.95e-98 299