Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0973 ATGAAGCTCAATTTTCGTCCTCGTTTCTCATCTCGCAACTACCGCTCCCACCGAAACCAAACTGATCATCCACAAACCTCGGACTCTTCCGAATGTTCGGGGCTCACAGTAACCTTAGTTCTTGCTGCTGTTTCAGTTACCGCTGCTGTTTCCGTGTACTTGTTCAAGACGAAAATGAAAACTTTGAACTCCAAGGTTCGTGAGCTTGAGGCATCCCTCAAGTCATCCTTAGAGAAATGCGCCTCTGAGAGGCAAGGCCGCATTAGGGCACAACAGTCCTTGAGAAAAGCACTAACACAACCTAAAAGTGAATACGTAGAGATGAATTACTATCCCATGGCACCTATTGGCATCATCCAATCATGCTTCTCTACAAGAAATGGAACCCCAAGGCAACCATTACTTGTACCTCTTGCTAGAGCATCTTTGATTTTCAATATAACTCGTGTACCACCAGCTTCACTTGAGGGTCTTGCAGAATATTCTCATTGCTGGGTTATATATGTATTTCATCTAAATACAGATCTTGAGAAGCTATGGAATCATCCATCTAAGTCAAAGTTCAAGGCAAAGGTTAGGGTTCCAAGATTGAAAGGTGGAAGAATGGGACTGTTTGCCACACGATCCCCACATCGTCCATGCCCCATTGGACTGACAGTTGCGAAGGTGGAAGCTGTCCAGGGAAATATGCTTTTGCTCTCTGGTGTGGACCTGGTTGATGGAACTCCAGTGCTTGATGTCAAGCCCTATCTACCATACTGTGACAGCATTGTGGAAGCAAAAGTGCCTAGTTGGTTGATGGAAGATAACTTACTTGCGGTAGCTTCTATAAGCTTCTCAGAGGGATTTACTTCAACCCTAGAGAATTGCTGGAGAATAGCAGAAAAGAAATCACTTTATGCATCAGCAGGCGAATTCCAAAGCTTGATAAGGCAGGTTCTTTCATGGGATATTCGGTCAGTTAGTCAACGGAAGAGACCTCATGATGCCATCTCAAAGAAAGACAATGATGAACATATGGGTGATCCTTCTGATGTAGATGAGAGCCTAGAGGAAGCAGCTTCTGTGCTTGAAAGAGAGAAGAATTCTCTATATTCCAAGGAAGTAACTTATCACCTTAATTTGGAGGGACTGGATGTCTCCTATAGAATTGATGACAATAGTAATGTCATCGTCGAAAAGGTGTCACCTTTTGCTGGCCTAAGCAATGATCGTAATTCTGTAGCTAGATATAAAGTACACTTTACTGTGGCTGATGATACTGGAACTACATCGGTTGTCCTTTTCGATGGTGTTGCCTCAAGGCTATTGAACAAAAGTGCTAAGCTCTTAAAGGACCAATTGATTTCGCACAGATCATCAAGCATTAGTGTCCAGGATGTATCTGATGATGCAGACATCATTAGAGAATTCACTCTTTCTCATCCCCAGGACCCTGATATTTCTGTTATCACTCCCTCCTCTGCTTAA 1470 0.4327 MKLNFRPRFSSRNYRSHRNQTDHPQTSDSSECSGLTVTLVLAAVSVTAAVSVYLFKTKMKTLNSKVRELEASLKSSLEKCASERQGRIRAQQSLRKALTQPKSEYVEMNYYPMAPIGIIQSCFSTRNGTPRQPLLVPLARASLIFNITRVPPASLEGLAEYSHCWVIYVFHLNTDLEKLWNHPSKSKFKAKVRVPRLKGGRMGLFATRSPHRPCPIGLTVAKVEAVQGNMLLLSGVDLVDGTPVLDVKPYLPYCDSIVEAKVPSWLMEDNLLAVASISFSEGFTSTLENCWRIAEKKSLYASAGEFQSLIRQVLSWDIRSVSQRKRPHDAISKKDNDEHMGDPSDVDESLEEAASVLEREKNSLYSKEVTYHLNLEGLDVSYRIDDNSNVIVEKVSPFAGLSNDRNSVARYKVHFTVADDTGTTSVVLFDGVASRLLNKSAKLLKDQLISHRSSSISVQDVSDDADIIREFTLSHPQDPDISVITPSSA 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0973 489 TIGRFAM tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 109 261 IPR023370 -
Lele22g0973 489 FunFam tRNA (Adenine(37)-N6)-methyltransferase isoform A 112 268 - -
Lele22g0973 489 ProSiteProfiles TsaA-like domain profile. 113 259 IPR023370 -
Lele22g0973 489 Gene3D - 112 269 IPR036414 -
Lele22g0973 489 PANTHER UNCHARACTERIZED 47 397 IPR040372 -
Lele22g0973 489 MobiDBLite consensus disorder prediction 327 351 - -
Lele22g0973 489 Pfam tRNA-methyltransferase O 128 255 IPR023370 -
Lele22g0973 489 Coils Coil 59 79 - -
Lele22g0973 489 Gene3D - 385 470 IPR012340 -
Lele22g0973 489 MobiDBLite consensus disorder prediction 327 343 - -
Lele22g0973 489 SUPERFAMILY YaeB-like 108 330 IPR036413 -
Lele22g0973 489 SUPERFAMILY Nucleic acid-binding proteins 406 447 IPR012340 -
Lele22g0973 489 MobiDBLite consensus disorder prediction 1 31 - -
Lele22g0973 489 CDD UPF0066 115 250 IPR023370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0973 Lele-ChrLele22 6826576 6833243 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0973 22 6826576 6833243 Lele22g0973 22 6826576 6833243 ECH
Lele22g0973 22 6826576 6833243 Lele23g1085 23 16386917 16392735 hybridization
Lele22g0973 22 6826576 6833243 Lele24g0948 24 6746504 6753713 hybridization