LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele22g0881	ATGGCAATTGCAGCTTCAACCTCATCCTCCCCCATGATGATCAGCCATAGCCACAACAACCTCGACGAAGACGACAGGAGGCAACAGCCGCCGCCGGGAGAGGCAGACGATGGCGGCAGCGATGATGGTCACGAGCAGGATGTGGTCATGCCTGGGTTTCGCTTCCACCCTACTGAAGAAGAACTTGTTGAGTTCTACCTTCGCCGTAAGGTTGAGGGCAAGCCTTTCAATGCTGAGCTCATTACTTTCCTCGATCTTTATCGATATGACCCTTGGGAGCTTCCTGGTTTGGCAGCGATTGGGGAGAAGGAATGGTACTTCTATGTGCCGAGAGATAGGAAGTATCGGAACGGTGATCGGCCAAACCGGGTGACTACTTCTGGGTATTGGAAGGCCACCGGAGCCGATAGAATGATCAAAACAGATGGCTCCAGATCCATCGGACTCAAGAAAACCCTAGTCTTCTATTCTGGTAAAGCTCCTAAAGGCATCCGAACCAGTTGGATTATGAACGAGTATCGCTTGCCCCACCACGAAACCGAACGATTTCAAAAGGCTGAGATATCTCTTTGTCGAGTGTACAAGAGAGCAGGCATAGACGATCATCCCTCTCTGCCTCGTTATCTGCCGATAACATCATCATCATCAAGAGCTTCGAATTCACATCATAATTCACACAGCAAGAACAAGGACAACGTCAACCAATTAATGGTTCATCATCAGAACATCAGATTCCTAGGACAACAAAATCATGATCAATATCAAACAACGGACCAAGTTGTCGATAAAATGAATCATCCAACTGAGGAAAACAGTAACACTTCCGATCATGCCAACAAGTTCAACAACAACAATCTGGATCATCATCAGGAGAAAGGCTTCATGCTCATGCAGCAACCAACAAAGCAACAAGCACAAGCTCAATTACATAAAGAGGAAGCCTCCTCCTTCTTCCCCGAAAAAGGCTCCACTACTTCTGATTCTTCCTCATTACCATCTAATGAAAATCTTAATAATGCAATAATGGTGGATGATCATCTCAATCGGCTAGTGAGTTATAATCAGCAGTTGCAGTACTACAATAACATTTATGCTCCTGCTCAGAGTCATCAGCAATATCAGCCCTACATGCAGTTCTCTAACATTCTGTTGCAGCCATCATCACAGCAATCAACATCAATGGCTCTTAATAATTCGATTCCACCAAACTCTTTCTCTGACAGATTGTGGGAGTGGAATCCAATAATCCCTGAGGCAGCAAACCGAGACTTCACCAGCAATATGGCCTTCAAGTAA	1296	0.456	MAIAASTSSSPMMISHSHNNLDEDDRRQQPPPGEADDGGSDDGHEQDVVMPGFRFHPTEEELVEFYLRRKVEGKPFNAELITFLDLYRYDPWELPGLAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIKTDGSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETERFQKAEISLCRVYKRAGIDDHPSLPRYLPITSSSSRASNSHHNSHSKNKDNVNQLMVHHQNIRFLGQQNHDQYQTTDQVVDKMNHPTEENSNTSDHANKFNNNNLDHHQEKGFMLMQQPTKQQAQAQLHKEEASSFFPEKGSTTSDSSSLPSNENLNNAIMVDDHLNRLVSYNQQLQYYNNIYAPAQSHQQYQPYMQFSNILLQPSSQQSTSMALNNSIPPNSFSDRLWEWNPIIPEAANRDFTSNMAFK	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele22g0881	431	MobiDBLite	consensus disorder prediction	265	286	-	-
	Lele22g0881	431	MobiDBLite	consensus disorder prediction	302	333	-	-
	Lele22g0881	431	Gene3D	NAC domain	58	199	IPR036093	GO:0003677\|GO:0006355
	Lele22g0881	431	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	47	303	-	-
	Lele22g0881	431	Pfam	No apical meristem (NAM) protein	51	175	IPR003441	GO:0003677\|GO:0006355
	Lele22g0881	431	FunFam	NAC domain-containing protein 35	58	199	-	-
	Lele22g0881	431	MobiDBLite	consensus disorder prediction	208	222	-	-
	Lele22g0881	431	MobiDBLite	consensus disorder prediction	18	49	-	-
	Lele22g0881	431	MobiDBLite	consensus disorder prediction	1	17	-	-
	Lele22g0881	431	MobiDBLite	consensus disorder prediction	1	49	-	-
	Lele22g0881	431	MobiDBLite	consensus disorder prediction	318	333	-	-
	Lele22g0881	431	SUPERFAMILY	NAC domain	47	195	IPR036093	GO:0003677\|GO:0006355
	Lele22g0881	431	ProSiteProfiles	NAC domain profile.	49	196	IPR003441	GO:0003677\|GO:0006355
	Lele22g0881	431	MobiDBLite	consensus disorder prediction	204	229	-	-
	Lele22g0881	431	MobiDBLite	consensus disorder prediction	265	281	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele22g0881	Lele-ChrLele22	5953442	5955497	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele22g0881	1	227	NAC Transcription Factor Family	AT2G02450	67.500	9.24e-111	330

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Lele22g0881		NAM	3.7e-35	No_clan