Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele22g0865 | ATGACGGACCAGACCGAGTTCAGTGTTCTATGCAGCCTCTTCACATGGACCCAGAGAAGCAAGTCGTCCGCCAAGAAGCGCTCCAAGTTCCGCAAATTCCTCGATACCTTCTGCAAAGACAGAAATTATTTCAGTGCTATTCGCTTGATTCTTCCCAATCTCGACCGAGAGCGAGGCTCCTATGGCCTCAAGGAGTCCGTTCTCGCTACCTCCCTCATTGACGCTCTTGGCATGTCCAGGGAGTCCGAGGACGCTCTACGCCTCGTTAATTGGCGCAAAGGTGGGGCAAAGACTGGTGCCAATGCCGGAAATTTTGCTCTTGTCGCTGCTGAGATGCTGCAGCGTAGGCAAGGGTTGGCATCTGGTAGATTGACAATAAAGGAGTTAAATGAGTTCCTTGATAAACTAGCTTCAAGTGAAAGCAGATTTTTCAATGTGGTTCTTCTGTGGCTTGACCATTGTTACAGGGCTGAGAAGACTTCAGTTCTTTCTACCCTTATTCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATACTCAAAGATCTAAAGCTTGGAATTAGTGAAAAGAGCATTTTCCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTAACTTGTGACTTGAAATTAGTTTGTGAAAAACTAAAGGATCGGAATCAACGCCATAAGAGACAGGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAACTAGCAAAGAGAGTTGCTAGTGCAACTGAAGCGTGGAAAAAGCTTCATGGGAAGGAAGTTGTTGTTGAGTGCAAGTTTGATGGTGATCGAATCCAAATTCATAAGAATGGAACAAATGTACATTTCTTCTCAAGGCAAGTTCATGCTGCGTGTATTCTTGATGGTGAAATGTTGGTTTGGGATAAATCCTTGAACCGTTTTGCTGAATTTGGTTCAAATCAGGAAATTGCAAAGGCAGCAAGGGATGGGCTTGATAGCGATAGACAGTTATGTTACGTTGCATTTGATATCCTTTATGTCGGAGATACAAGTGTAATACATCAGACTTTGAAGGAAAGACACGAGCTTCTCCGTAAAGTTGTGAGGCCCTTAAAGGGTAGTTTGGAAATTTTAATACCTAATGGTGGCCTCAACTCTAATTGTCCATTTGGGGAACCTTGCTGGTCATTTATTGCTCGTAATGTGGATGAAGTTGAGAGATTTTTCAAAGAAACTACTGAGAATAGAGACGAGGGCATTGTTCTGAAAGACCTTGGTTCCAAATGGGAACCCAGTGACCGCAGTGGAAAGTGGATGAAATTGAAGCCAGAGTATATACATGCTGGTTCTGATCTGGATGCACTTATTATAGGTGGCTATTATGGCTCTGGACGAAGAGGAGGGGAGGTTGCTCAATTCTTGGTGGGCCTAGCAGATCGTCCCTCCCCCAGTGCACATCCCAAGAGATTTATCTCATTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCCCTAGTAACCAAACTGAAACCATATTTCAGGTCAGGTTTGGTTGTTCATAGAGCTTGTCTGGTATTTGCTGCACCTTACAGTCTAAGATTTCCTCGGATTGACAGGGTGAGATATGACAAACCCTGGTATGCATGTCTTGATTTGCAGTCATTTATAGAACTTGTGCATTCTAGCAATGGCACCACAAAGGCGAGCACAGAGTATGGCAGCACGCAGGATGGTAAATCAAAACGCCTGAAATCCTCTAAAAGGGAAGGGGAAAAAAACATGTCCGTTGTTCATGAGAGTGCAAGCATGCAAAAGGGCCTAGTTCTATTTCCCAGATATATAATAAAGAGTCTTCTGGCAGGTTTTAAATTTCAAGCTGCAAAACGTCATGGTGATATCATTCATTATAGTTGGGTATTAGATTGCTGTACGCAAAAGAAGCTTATTCCCTTACAGCCAAAGTACTTCCTTTTCGTTTCTGAACTCACAAAGAAGAAGTTATATGAAGAAATTGATGAGTTCTCAGACTCATACTACTTGAATCTTGATTATGCGGACATCAAGCAGTCTGAAATTCTCATGCGTGGTGGCAAAGTTACCGATAGTCCCACTTCTGCTACCCACTTTGTGGCCTTGTCAGTTCCAGGATATAATGTTGACTTTAAAGAAATGTTAACAAGGAAACTAACCTTGCATTTGTTCTTTTTTCCCCCTTCCTTCCCTGGGGTGGGTGGATTTTCATCTGCATATAGTTTCACTTCAGTTGAAGGAAAATTTCTTTCGAGCAAGAGGTTGCATGTTGTTGGATATCAGTGGCTTGAAGATTGTTTGGAACAAGGAGGAAGATTACCAGAACAAACATATACATTGAAACCCAGCGGAATAGAAGAACCAACCTCTGAAGAGTGCGAACATGACTTGGCTTTAGGGGGTTATTGTGGTGGTGATAATGTAGAAGACCAAAATTCGTCACTTGTCTCTGAAAAGGGAAGTCAGCCGAGAAGTGCAAAACCTGTTGATGAAAGTTTGGTGTCCTTGGAGAAGAGTGGCAAAAGGAAACGAGGAAGACCTGTAGTAGGCAGAGGCAGTAAAATGGTTAAAACAGCCGGCAACCAAACTCATCGATCACGGGCACGTATTGGAAAAAGGCCTGCAAAAATATGTGAAAATGAAACAGATGAAAGTGGTTCTCATGATGAAAAGTCATGTGAAGGTGAGATTGACTCGAAAGAATTCAGCCGTGACTCTCGTAATGGCGCAGAAGTCACCGAGACTGTGATATTACAAAATCCTGAACCATCAAAACGAGACGATACAGTTAAGCAAGAGGTTTTGAAGGAAGTTGAACGTGAAGAAAATTCTGTTCCCGAAATTCAAATGACCGAGCAGCATAATGACCAAAACACTAAGGCTGAACAACATGAAGTTATGGCTGATCCAATACAGGCGATGCTTTTTGATATGTTCCCTAGCCTTGCGACAAAGAAAGTAGATGAAACAAAGAATGATAGTGTTGAAGATGAAAAGCCAACAAAGAATGATAGTGTTAAAGATGATAAGCCAACAAAGAATGATAGTGTTAAAGATGATAAGCCACCTGTACAATCCAATGCTGGGCCTTCAAGGAAAAAGAAAGTTAGCTATAAGGATATTGCTAATGAGCTGCTTAAGGATTAG | 3168 | 0.4211 | MTDQTEFSVLCSLFTWTQRSKSSAKKRSKFRKFLDTFCKDRNYFSAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRESEDALRLVNWRKGGAKTGANAGNFALVAAEMLQRRQGLASGRLTIKELNEFLDKLASSESRFFNVVLLWLDHCYRAEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVASATEAWKKLHGKEVVVECKFDGDRIQIHKNGTNVHFFSRQVHAACILDGEMLVWDKSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQTLKERHELLRKVVRPLKGSLEILIPNGGLNSNCPFGEPCWSFIARNVDEVERFFKETTENRDEGIVLKDLGSKWEPSDRSGKWMKLKPEYIHAGSDLDALIIGGYYGSGRRGGEVAQFLVGLADRPSPSAHPKRFISFCRVGTGLSDDELDALVTKLKPYFRSGLVVHRACLVFAAPYSLRFPRIDRVRYDKPWYACLDLQSFIELVHSSNGTTKASTEYGSTQDGKSKRLKSSKREGEKNMSVVHESASMQKGLVLFPRYIIKSLLAGFKFQAAKRHGDIIHYSWVLDCCTQKKLIPLQPKYFLFVSELTKKKLYEEIDEFSDSYYLNLDYADIKQSEILMRGGKVTDSPTSATHFVALSVPGYNVDFKEMLTRKLTLHLFFFPPSFPGVGGFSSAYSFTSVEGKFLSSKRLHVVGYQWLEDCLEQGGRLPEQTYTLKPSGIEEPTSEECEHDLALGGYCGGDNVEDQNSSLVSEKGSQPRSAKPVDESLVSLEKSGKRKRGRPVVGRGSKMVKTAGNQTHRSRARIGKRPAKICENETDESGSHDEKSCEGEIDSKEFSRDSRNGAEVTETVILQNPEPSKRDDTVKQEVLKEVEREENSVPEIQMTEQHNDQNTKAEQHEVMADPIQAMLFDMFPSLATKKVDETKNDSVEDEKPTKNDSVKDDKPTKNDSVKDDKPPVQSNAGPSRKKKVSYKDIANELLKD | 1055 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele22g0865 | 1055 | MobiDBLite | consensus disorder prediction | 574 | 592 | - | - | |
| Lele22g0865 | 1055 | SUPERFAMILY | Nucleic acid-binding proteins | 444 | 557 | IPR012340 | - | |
| Lele22g0865 | 1055 | ProSiteProfiles | BRCT domain profile. | 630 | 653 | IPR001357 | - | |
| Lele22g0865 | 1055 | MobiDBLite | consensus disorder prediction | 931 | 954 | - | - | |
| Lele22g0865 | 1055 | MobiDBLite | consensus disorder prediction | 563 | 592 | - | - | |
| Lele22g0865 | 1055 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 199 | 437 | - | - | |
| Lele22g0865 | 1055 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 264 | 272 | IPR016059 | GO:0003909 | |
| Lele22g0865 | 1055 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 324 | 473 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
| Lele22g0865 | 1055 | Gene3D | - | 516 | 570 | IPR012340 | - | |
| Lele22g0865 | 1055 | ProSiteProfiles | BRCT domain profile. | 757 | 787 | IPR001357 | - | |
| Lele22g0865 | 1055 | PANTHER | DNA LIGASE 4 | 686 | 1049 | IPR029710 | GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103 | |
| Lele22g0865 | 1055 | MobiDBLite | consensus disorder prediction | 994 | 1027 | - | - | |
| Lele22g0865 | 1055 | Gene3D | DNA ligase/mRNA capping enzyme | 234 | 438 | - | - | |
| Lele22g0865 | 1055 | TIGRFAM | dnl1: DNA ligase I, ATP-dependent (dnl1) | 61 | 563 | IPR000977 | GO:0003910|GO:0005524|GO:0071897 | |
| Lele22g0865 | 1055 | MobiDBLite | consensus disorder prediction | 994 | 1055 | - | - | |
| Lele22g0865 | 1055 | MobiDBLite | consensus disorder prediction | 817 | 979 | - | - | |
| Lele22g0865 | 1055 | MobiDBLite | consensus disorder prediction | 1040 | 1055 | - | - | |
| Lele22g0865 | 1055 | Gene3D | BRCT domain | 582 | 676 | IPR036420 | - | |
| Lele22g0865 | 1055 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 412 | 436 | IPR016059 | GO:0003909 | |
| Lele22g0865 | 1055 | Gene3D | BRCT domain | 678 | 805 | IPR036420 | - | |
| Lele22g0865 | 1055 | Pfam | DNA ligase N terminus | 6 | 200 | IPR012308 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
| Lele22g0865 | 1055 | FunFam | DNA ligase | 1 | 232 | - | - | |
| Lele22g0865 | 1055 | Gene3D | - | 440 | 515 | IPR012340 | - | |
| Lele22g0865 | 1055 | MobiDBLite | consensus disorder prediction | 879 | 915 | - | - | |
| Lele22g0865 | 1055 | SUPERFAMILY | BRCT domain | 687 | 789 | IPR036420 | - | |
| Lele22g0865 | 1055 | CDD | Adenylation_DNA_ligase_IV | 228 | 440 | IPR044125 | GO:0005524 | |
| Lele22g0865 | 1055 | Gene3D | - | 1 | 232 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
| Lele22g0865 | 1055 | Pfam | ATP dependent DNA ligase domain | 240 | 288 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
| Lele22g0865 | 1055 | Pfam | ATP dependent DNA ligase domain | 291 | 436 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele22g0865 | Lele-ChrLele22 | 5768664 | 5780299 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele22g0865 | 228 | 541 | Core DNA Replication Machinery Family | AT1G08130 | 26.455 | 1.28e-26 | 115 |