LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele22g0833	ATGAAGAAAGGAAACTTGGGCCTCAATCTCAAGCTCAATGTTCCTGCTTCTGATCAGGTTTCCTTCGCCAAGTTTCTGACTGAAAGCGGGACATTTAAGGATGGGGATCTGCTCGTCAATCGGGATGGAGTCCGCATTGTGACTGAGACAGAAGTCGAAGCTGCACCCCCCATCAGACCACTAGACAACCAGTTAAATTTGGCAGATATAGACATAATCAAAGTGGTTGGCAAGGGAAATGGCGGGGTAGTGCAACTGGTGCAACACAAATGGACTAATCAGTTTTTTGCACTAAAGGTTATCCAAATGAATATTGAGGAGTCCATGCGAAGGCAGATAGCACAAGAGCTTAAAATCAATCAGTCAGCTCAATGTCCATATGTTGTTGTTTGCTATCACTCATTCTATGATAATGGTGCCATATCAATCATCTTAGAGTACATGGATGGAGGTTCTTTAGCAGATCTTCTGAAGAAAGTTAGAACAATTCCGGAAAAATATCTTGCTGCTATATGTAAGCAGGTGCTCAAGGGTTTGATATATCTTCACCATGAAAAACATATTATCCACAGGGACTTAAAACCTTCTAATCTGTTGATAAACCATAGAGGGGAGGTGAAGATTACTGACTTTGGTGTGAGTGTAATAATGCAAACTACATCTGGTCAAGCAAATACTTTCATCGGCACATACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAAGATGGCTACAACTACAAAAGTGATATATGGAGCTTGGGGCTGATATTGCTTGAGTGTGCTACTGGGCGGTTTCCATATACCCCACCAGATCAAGGTGAAAGATGGGAAAGTATTTTTGAGCTAATTGAGACCGTTGTTGATAAACCTCCTCCCTCTGCTCCATCTGATCAATTTTGTCCAGAATTTTGCTCGTTTGTCTCCGCATGTTTACGGAAAGATCCAAAAGATAGACTGTCAGCTCAGGATCTTATGGGACATCCTTTTCTCAACATGTATGGGGACTCGGATGTAGATCTTTCGGCTTATTTCAAGAATGCAGGATCCCCGCTTGCAACTGTGCCTACTTCTACTTGATCATAG	1089	0.4215	MKKGNLGLNLKLNVPASDQVSFAKFLTESGTFKDGDLLVNRDGVRIVTETEVEAAPPIRPLDNQLNLADIDIIKVVGKGNGGVVQLVQHKWTNQFFALKVIQMNIEESMRRQIAQELKINQSAQCPYVVVCYHSFYDNGAISIILEYMDGGSLADLLKKVRTIPEKYLAAICKQVLKGLIYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSVIMQTTSGQANTFIGTYNYMSPERINGSQDGYNYKSDIWSLGLILLECATGRFPYTPPDQGERWESIFELIETVVDKPPPSAPSDQFCPEFCSFVSACLRKDPKDRLSAQDLMGHPFLNMYGDSDVDLSAYFKNAGSPLATVPTSTXS	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele22g0833	362	Gene3D	Phosphorylase Kinase; domain 1	48	149	-	-
	Lele22g0833	362	SUPERFAMILY	Protein kinase-like (PK-like)	67	337	IPR011009	-
	Lele22g0833	362	FunFam	Mitogen-activated protein kinase kinase 6	40	149	-	-
	Lele22g0833	362	SMART	serkin_6	70	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele22g0833	362	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	15	336	-	-
	Lele22g0833	362	FunFam	Mitogen-activated protein kinase kinase 6	151	351	-	-
	Lele22g0833	362	CDD	PKc_MAPKK_plant_like	85	335	-	-
	Lele22g0833	362	Pfam	Protein kinase domain	72	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele22g0833	362	ProSitePatterns	Protein kinases ATP-binding region signature.	76	99	IPR017441	GO:0005524
	Lele22g0833	362	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	188	200	IPR008271	GO:0004672\|GO:0006468
	Lele22g0833	362	ProSiteProfiles	Protein kinase domain profile.	70	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele22g0833	362	Gene3D	Transferase(Phosphotransferase) domain 1	150	354	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele22g0833	Lele-ChrLele22	5517748	5522467	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele22g0833	1	327	MAP Kinase Kinase Gene Family	AT4G29810	66.667	9.71e-173	482

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Lele22g0833		Pkinase	1.1e-68	CL0016