LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele22g0824	ATGGGAAGAAGCCCTTGTTGCTCCAAGGAGGGCTTGAACAGAGGCGCATGGACCGCTCATGAAGACAAGATTCTCAGAGACTTCATCTCCATCCACGGCGAAGGACGGTGGCGCAACCTCCCCAAGCGAGCAGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTCCGATGGTTAAACTATCTCAGACCAGATATCAAGAGAGGCAATATCACGTCTGATGAAGAAGAGCTTATCATTCGTCTTCACAAGCTCTTGGGAAACAGATGGTCTTTGATCGCCGGCAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAATTACTGGAACACGAATTTAGGTAAGAAAGTGAAGCATAACCCTCATCACCAGAACAATGTTGCTTCCTCTGGTAGATTCTCTGCTCAACCTAAGACCGACAAAACTTCCAACAATAATCCTCCGAATCCCAGACCAACATCTAACGCCTTGACTTCTCCAGATTCCAAGCTCAGTAATAATGTTGTCCGTACAAAAGCCACCAAGTGCTCTAAGGTGGTCATTACCCCACGTCCTCCTTCTTCCAGGCAGCCGACCAAGTCTGAAGTAGCTGAGACATTTCAACCGGCGGATGTTACTGCTGCGGCGGAGGCGGCTGACTGTAACCAGATGACAGAATTACTCAACGCCGAGGGGAAGGATCATCATCAGGAGCCGTCGTCTGCGGATTTGCTGGTGGATTTCAACGTGGGAGAGATCTTCTTGTCGGACCTTCTGAACTCGGATTTCTCAGATATGTGCGACTTCAGTAACAACAATAGCGTCGACGGTGGGGGCTTATCCCCATCTTCCGACCAACCCTTCGTGTTCTCCGATGAAATTCTGAACGACTGGATGCAGAGCAAGGCGCAAGAGACAAATGTGGCCAATAATCTTCACTCTTTCACATCCTTCCTGGAATCCAGTGAGGAATGGCTAGCAGAGTAG	963	0.4901	MGRSPCCSKEGLNRGAWTAHEDKILRDFISIHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKHNPHHQNNVASSGRFSAQPKTDKTSNNNPPNPRPTSNALTSPDSKLSNNVVRTKATKCSKVVITPRPPSSRQPTKSEVAETFQPADVTAAAEAADCNQMTELLNAEGKDHHQEPSSADLLVDFNVGEIFLSDLLNSDFSDMCDFSNNNSVDGGGLSPSSDQPFVFSDEILNDWMQSKAQETNVANNLHSFTSFLESSEEWLAE	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele22g0824	320	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Lele22g0824	320	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Lele22g0824	320	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	213	-	-
	Lele22g0824	320	SMART	sant	66	114	IPR001005	-
	Lele22g0824	320	SMART	sant	13	63	IPR001005	-
	Lele22g0824	320	Gene3D	-	14	66	-	-
	Lele22g0824	320	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Lele22g0824	320	MobiDBLite	consensus disorder prediction	180	197	-	-
	Lele22g0824	320	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Lele22g0824	320	CDD	SANT	71	112	IPR001005	-
	Lele22g0824	320	FunFam	MYB-related transcription factor	13	66	-	-
	Lele22g0824	320	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lele22g0824	320	MobiDBLite	consensus disorder prediction	113	197	-	-
	Lele22g0824	320	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Lele22g0824	320	MobiDBLite	consensus disorder prediction	122	172	-	-
	Lele22g0824	320	Gene3D	-	70	144	-	-
	Lele22g0824	320	CDD	SANT	16	61	IPR001005	-
	Lele22g0824	320	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Lele22g0824	320	FunFam	Transcription factor TT2	70	143	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele22g0824	Lele-ChrLele22	5433425	5434578	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele22g0824	4	126	MYB Transcription Factor Family	AT3G13540	68.702	5.41e-62	196

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele22g0824		Myb_DNA-binding	3.7e-13	CL0123