Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0794 ATGATCGTGGACAAGGAGACTTTGGCAATATTTCCAGACTATTCCACATACTACCACCGCCATCCCTTCTTTGGATATTTCTTCGATACAAAACCACTCGTCATCCGAAAAGTCATGGCTGGAGTAGCACCCGATAGTTCACAATTTGACGCTCGTCAATATGATTCAAAAATGGAACTGATTACAACTGACGGGCAGGACTTCTTTACATCTTATGATGAGGTTCATGATAGTTTTGATGCCATGGGTTTGCACGAGAATCTTCTCAGAGGCATTTATGCATATGGATTTGAGAAGCCATCGGCTATACAGCAAAGGGGAATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAGCAAGCTCAGTCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGGGTTTTGCAGCAGCTTGACTATAGTGTGATGGAATGCCAGGCCTTGGTATTAGCACCAACTCGAGAACTTGCTCAGCAGATTGAGAAGGTTATGCGAGCACTTGGAGACTATCTTGGTGTGAAGGTGCATGCATGCGTGGGGGGAACTAGTGTTCGTGAAGACCAACGCATTCTATCTAGTGGTGTTCATGTTGTTGTTGGTACCCCGGGTCGTGTATTTGACATGCTACGCAGGCAGTCACTTCGGCCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCTCGAGGTTTTAAAGATCAGATCTATGATATCTTCCAGCTACTTCCATCCCAGATTCAGGTGGGAGTTTTTTCGGCTACAATGCCTCCTGAGGCTCTTGAGATCACTAGGAAGTTTATGAACAAACCTGTTAGAATTCTTGTGAAGCGTGATGAGCTAACCTTGGAGGGTATAAAACAGTTTCATGTCAATGTTGAGAGAGAGGAATGGAAGCTAGACACACTCTGTGATCTTTATGAAACATTGGCCATCACTCAGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATTGGCTTACTGACCAGATGCGAAGCCGGGACCACACAGTTTCAGCAACCCATGGAGACATGGACCAGAATACCAGAGATATTATCATGCGTGAATTCCGTTCTGGATCTTCTCGTGTTTTAATAACAACAGATCTTTTGGCTCGTGGTATTGATGTCCAGCAAGTGTCACTAGTTATTAATTATGATCTTCCTACTCAGCCTGAGAACTATCTCCATCGTATTGGCCGTAGTGGGAGGTTTGGCAGGAAAGGTGTTGCAATCAATTTTGTGACCAGGGACGATGAAAGAATGTTGTTTGACATCCAGAGATTTTATAACGTGGTAATTGAGGAGCTGCCATCAAATGTTGCTGAACTCCTATAA 1353 0.439 MIVDKETLAIFPDYSTYYHRHPFFGYFFDTKPLVIRKVMAGVAPDSSQFDARQYDSKMELITTDGQDFFTSYDEVHDSFDAMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSVMECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSQIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPSNVAELL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0794 450 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 289 450 IPR001650 -
Lele22g0794 450 CDD DEADc_EIF4A 81 279 - -
Lele22g0794 450 Pfam DEAD/DEAH box helicase 102 263 IPR011545 GO:0003676|GO:0005524
Lele22g0794 450 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 278 IPR014001 -
Lele22g0794 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 431 IPR027417 -
Lele22g0794 450 FunFam Eukaryotic initiation factor 4A-III 285 450 - -
Lele22g0794 450 CDD SF2_C_DEAD 290 420 - -
Lele22g0794 450 Gene3D - 286 450 IPR027417 -
Lele22g0794 450 Gene3D - 67 285 IPR027417 -
Lele22g0794 450 PANTHER RNA HELICASE 60 434 - -
Lele22g0794 450 Pfam Helicase conserved C-terminal domain 303 411 IPR001650 -
Lele22g0794 450 SMART helicmild6 330 411 IPR001650 -
Lele22g0794 450 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Lele22g0794 450 FunFam Eukaryotic initiation factor 4A-II 65 284 - -
Lele22g0794 450 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 224 232 IPR000629 -
Lele22g0794 450 SMART ultradead3 96 293 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0794 Lele-ChrLele22 5240530 5243504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0794 39 450 Eukaryotic Initiation Factors Gene Family AT1G72730 87.440 0.0 752