Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0768 ATGCCTTTCATTAGGAGCATAATACGTGATATGAGATCGAGGTCCCACCAGCTGATCAAGGACGGTTCGGTGGAGCCCGTCGTCACCGATGGCCTGAAGCAGAGCTGCTGGGCCAACATGCCACAGGAGCTTCTCAGAGAGCATGGCCCGAGGGAAAATCCTCTCCACTGCTTCATAAAGCGCAACAGATCAACCCAGACATATTATTTGTTTCTCAGTATAACTAACGCATTAGGTGATAATGGAAAGTTTCTTCTTGCAGCATGCAAGTGTAGACATGCCACCTGCACAGATTATATCATCTCTCTTGATGCTGATGATATGTCAAAGGGAAGCAACACTTATGTTGGGAAACTGAGATCAAATTTTCTGGGAACGAAGTTCACAATTTATGATGGCCAGCCACCTCACAAAGGATCAAAGACTACAAAAAGCCGCTCTGTTAAACTGGGGAATCTAAATCAAGTTTCTCCAAAGGTTGCTACTGGTAACTATCCAGTGGCACACATCTTGTATGAATTAAATGTGCTCGGCTCCAGGGGTCCAAGGAGAATGAAATGTGTCATGGACACCATTCCTGCCTCTGCAATTCAACCAGGAGGGGTGAGACAATCTGAACAGACTGAGCTTACTCCGAGCAATGTAGAAAAGGTTCCATTATTCCCATTTTTTAGGTCAAAATCAAATAGAATTGAAAACTCTATATCTAGATCCCTGGGTAATGATGAGTTGCTAGTGTTAAAAAGTAAGCCTCCAAGGTGGCATGAGCAGCTCCAATGTTGGTGTTTGAACTTCAAAGGACGAGTCACAGTTGCTTCAGTCAAGAACTTCCAGCTGGTGGCTTCCCCAGAAAATGGACCTTCTGCAGCAGAACATGAGAAGGTCATCCTCCAATTTGGGAAAGTAGGGAAGGATTTGTTTACAATGGATTACCAGTACCCCATCTCAGCATTTCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGAAACCAAAATTGCTCGTGAATGA 1008 0.4454 MPFIRSIIRDMRSRSHQLIKDGSVEPVVTDGLKQSCWANMPQELLREHGPRENPLHCFIKRNRSTQTYYLFLSITNALGDNGKFLLAACKCRHATCTDYIISLDADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHKGSKTTKSRSVKLGNLNQVSPKVATGNYPVAHILYELNVLGSRGPRRMKCVMDTIPASAIQPGGVRQSEQTELTPSNVEKVPLFPFFRSKSNRIENSISRSLGNDELLVLKSKPPRWHEQLQCWCLNFKGRVTVASVKNFQLVASPENGPSAAEHEKVILQFGKVGKDLFTMDYQYPISAFQAFAICLSSFETKIARE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0768 335 PANTHER TUBBY-RELATED 24 333 - -
Lele22g0768 335 SUPERFAMILY Tubby C-terminal domain-like 43 333 IPR025659 -
Lele22g0768 335 Pfam Tub family 46 330 IPR000007 -
Lele22g0768 335 PRINTS Tubby superfamily signature 265 281 IPR000007 -
Lele22g0768 335 PRINTS Tubby superfamily signature 292 311 IPR000007 -
Lele22g0768 335 PRINTS Tubby superfamily signature 99 115 IPR000007 -
Lele22g0768 335 PRINTS Tubby superfamily signature 313 335 IPR000007 -
Lele22g0768 335 PRINTS Tubby superfamily signature 164 191 IPR000007 -
Lele22g0768 335 PRINTS Tubby superfamily signature 115 139 IPR000007 -
Lele22g0768 335 PRINTS Tubby superfamily signature 247 264 IPR000007 -
Lele22g0768 335 ProSitePatterns Tub family signature 1. 265 278 IPR018066 -
Lele22g0768 335 Gene3D Tubby Protein; Chain A 38 335 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0768 Lele-ChrLele22 5018634 5021362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0768 12 335 TUB Transcription Factor Family AT2G47900 58.115 4.36e-142 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele22g0768 Tub 7e-108 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0768 22 5018634 5021362 Lele22g0768 22 5018634 5021362 ECH
Lele22g0768 22 5018634 5021362 Lele23g1264 23 17998072 18000968 hybridization
Lele22g0768 22 5018634 5021362 Lele24g0756 24 5067934 5070676 hybridization