Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0762 ATGGAAGGCTATGACAATGAACGTCTTGGTTTTGGGAAGATGGGATACGGGTGCAAGCACTACAGGAGAAGATGCAAGATTCGGGCACCCTGCTGCAACGAACTGTACTCCTGCCGTCATTGTCATAACGAGGCAACGAGCATGTTGAGGAACCCCTTTGATCGACACGAAATGGTTCGCCAAGATGTGAAACAAGTTGTTTGTTCAGTTTGTGATACAGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACACATGCAAATTCTTCGATGATGATACGGAGAAACAGCCGTTTCATTGTGATGATTGTGGAATCTGCAGAATTGGTGGTCGTGATAACTTTTTCCACTGCAACAAGTGCGGGTCTTGCTATTCACTTGGTCTACTTGATAATCATTTATGTGTAGAGGACTCCATGAGGCATCACTGTCCCATATGTTATGAGTACCTTTTTGATTCAGTGAAGGATACTACCGTTATGAAATGTGGTCACACAATGCATTATGAATGTTTCCAAGAGATGATCAAACGTGAAAAGTATTGTTGCCCCATATGTTCCAAGTCAGCGATCGACATGTCGATGATCTGGAAGATGATTGATGAAGAGATTGAAGCAACTCTCATGCCTGAAGATTATCGGCACAGGAAGGTGTGGATACTGTGTAATGACTGCAATGACATAACAGAAGTAAACTTCCACATAGTTGGGCAAAAATGTGGGCACTGCAGATCATACAACACTCGTGAAATTGCTCCACCTGTTCTTCCTCAATGA 804 0.4328 MEGYDNERLGFGKMGYGCKHYRRRCKIRAPCCNELYSCRHCHNEATSMLRNPFDRHEMVRQDVKQVVCSVCDTEQPVAQVCTNCGVKMGEYFCNTCKFFDDDTEKQPFHCDDCGICRIGGRDNFFHCNKCGSCYSLGLLDNHLCVEDSMRHHCPICYEYLFDSVKDTTVMKCGHTMHYECFQEMIKREKYCCPICSKSAIDMSMIWKMIDEEIEATLMPEDYRHRKVWILCNDCNDITEVNFHIVGQKCGHCRSYNTREIAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0762 267 SUPERFAMILY RING/U-box 152 204 - -
Lele22g0762 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Lele22g0762 267 Gene3D - 227 262 - -
Lele22g0762 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Lele22g0762 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Lele22g0762 267 FunFam RING finger and CHY zinc finger domain-containing protein 1 224 265 - -
Lele22g0762 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Lele22g0762 267 Pfam Ring finger domain 152 195 IPR001841 -
Lele22g0762 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Lele22g0762 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 264 - -
Lele22g0762 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Lele22g0762 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 226 IPR013083 -
Lele22g0762 267 SMART ring_2 153 195 IPR001841 -
Lele22g0762 267 SUPERFAMILY CHY zinc finger-like 16 87 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0762 Lele-ChrLele22 4990535 4993228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0762 13 266 C2H2 Transcription Factor Family AT3G18290 41.923 1.35e-57 196
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0762 22 4990535 4993228 Lele22g0762 22 4990535 4993228 ECH
Lele22g0762 22 4990535 4993228 Lele23g1270 23 18023533 18029166 hybridization
Lele22g0762 22 4990535 4993228 Lele24g0750 24 5031461 5034958 hybridization