Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0759 ATGGCTCGCCCTTCAAAGCCTCAGGAGTCTTCCGACGAACCTATGTCGAACGGTTCGAGTTCGTCGGAGGAGGAGCAGGTCAACGATCAGATCAACGATGAGGAGGACGAAGAGGAGCTCCAAGCTGTGGCTCGCTCCGCCAGCTCTGATGATGAAGATGCTGCCGATGACAATTCGGTCGATTCCGATGGAGATGGTGACGAGGATGAACAGGTTGAAGGTGTTGTCGATCCTGAAATTGCTAGGCGGGAAAAGGCAAGATTGTATGAAATGCAGAAGCTGAAGAAACAAAAGATTCAGGAGATGCTGGATGAGCAAAATGCTGCCATTGATGCTGATATGAACAACAAGGGGAAGGGTCGCTTGAAGTATCTCCTACAGCAAACTGAACTGTTTGCTCATTTTGCAAAAGGTGACCAATCATCTCAAAAGAAGTCCAAGGGAAGGGGTCGGCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTATCTAAAAGAAGAGGAAGATGGATTAGCAGGAAACACACGATTAGTGATGCAACCATCATGTATTCAAGGAAAGATGAGGGATTACCAACTTGCTGGCTTAAACTGGCTTATACGATTGTATGAGAATGGGATAAATGGAATTCTGGCAGATGAGATGGGGCTTGGTAAAACACTACAAACTATCTCCTTATTGGGCTATTTGCATGAGTTTAGAGGAATAACTGGTCCTCACATGGTTGTTGCTCCAAAATCTACACTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCCATCTTGCGGGCAATAAAGTTCCTTGGCAATCCTGAAGAAAGGAGGCATATCAGAGAGGAATTATTAGTTGCTGGGAAGTTTGATGTGTGTGTCACCAGTTTTGAAATGGCCATCAAGGAGAAGTCTGCTTTGCGTCGTTTTAGTTGGCGCTATATAATTATAGATGAAGCCCATCGAATCAAGAATGAGAATTCCCTCCTTTCCAAGACAATGAGGCTCTATAATACAAATTATCGCCTTCTTATCACTGGTACACCACTCCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAATTTTCTTCTTCCAGAAATATTTAGTTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGACAATGACCAGCAGGAGGTTGTTCAACAATTGCACAAGGTCCTCCGGCCATTTCTCCTTCGAAGGTTGAAATCAGATGTTGAAAAAGGTTTGCCACCAAAAAAGGAAACCATTCTTAAAGTAGGCATGTCACAAATGCAGAAGCACTATTATAAGGCTTTACTGCAGAAGGATCTTGAGGTTGTTAATGCTGGTGGAGAACGGAAACGTCTGCTGAATATAGCCATGCAACTACGTAAATGTTGTAATCATCCATATCTTTTTCAAGGTGCTGAACCTGGTCCACCCTATACGACAGGGGACCATCTTATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAATTGCTTCCTAAATTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGACTGCTAGACATACTCGAAGATTATCTGATGTTTCGTGGATACCAATATTGCCGTATTGATGGTAATACTGGTGGAGAAGATCGTGACTCTTCCATTGAGACTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGGGCTGGAGGCCTTGGCATTAATCTTGCCACTGCTGATGTTGTCATCCTTTATGACAGTGATTGGAACCCACAGGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGATTCTGCACTGAGTACACAATTGAGGAGAAGGTCATTGAAAGGGCTTACAAAAAGCTAGCCCTTGACGCTCTTGTGATTCAGCAAGGACGATTAGCAGAGCAGAAGACTGTAAATAAAGATGAGTTACTTCAGATGGTCAGATTTGGTGCTGAAATGGTTTTCAGTTCTAAGGATAGTACAATTACCGATGAGGATATTGACAGGATTATTGCTAAAGGAGAGGAAGCAACAGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCTATAAAATTTAAGATGGATGACACTGCGGAGTTGTATGATTTTGATGATGAAAAGGATGAGAATAAAGTTGATTTCAAAAAAATTGTAAGTGATAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGCAACTACTCTGAGTCTGAATATTTTAAGCAAACACTGCGCCAAGGTGGCCCTACTAAGCCAAAAGAGCCCCGTATTCCTAGGATGCCTCAGCTGCATGATTTCCAGTTCTTCAATACACAAAGGCTGAGTGAGTTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAGGTAAAAGACTCCATAGATGTTGACGAACCAGAAGAGGTGGGAGATCCCTTAACTGCTGAAGAGCTGGAAGAAAAGGAGCGCTTACTGGAGGAGGGATTTTCTTCATGGAGCCGAAGGGATTTCAATACTTTCATTAGAGCCTGTGAAAAGTATGGCCGAAATGATATAAAGAGTATTGCTTCTGAGATGGAAGGAAAATCAGAGGAGGAAGTTGAACGATATGCAAAGGTTTTCAAAGAAAGATATAAGGAGTTAAATGATTATGATAGAATTATCAAAAACATTGAAAGAGGGGAGGCTAGAATTTCTAGAAAAGATGAGATCATGAAAGCTATTGGGAAGAAGCTGGATCGATACAAGAATCCTTGGCTGGAGTTGAAGATACAATATGGGCAAAACAAAGGAAAGTTATACAATGAAGAATGTGATAGATTCATGATATGCATGGTTCACAAACTCGGCTATGGGAATTGGGATGAGTTGAAGGCAGCGTTTCGAACATCACCTTTATTTCGATTTGATTGGTTTGTGAAGTCTCGCACAACACAGGAACTTGCTAGGAGATGCGACACCCTCATTAGGTTGGTAGAGAAGGAAAACCAAGAATACGATGAGAGAGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCTAAGAGCATGACCTCATCAAAACGGGGCTCAGCTAGACAGACAGACGGTTCATCATCGGTAAAGAAGCGCAGACAGTTAACTATGGATGACTATGGAAAAAGGAGAAAATAA 3189 0.4183 MARPSKPQESSDEPMSNGSSSSEEEQVNDQINDEEDEEELQAVARSASSDDEDAADDNSVDSDGDGDEDEQVEGVVDPEIARREKARLYEMQKLKKQKIQEMLDEQNAAIDADMNNKGKGRLKYLLQQTELFAHFAKGDQSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLAGNTRLVMQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPILRAIKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSSETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKHYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDSSIETFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKVDFKKIVSDNWIEPPKRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKSEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTSSKRGSARQTDGSSSVKKRRQLTMDDYGKRRK 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0759 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 688 IPR027417 -
Lele22g0759 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 405 IPR027417 -
Lele22g0759 1062 SMART helicmild6 521 605 IPR001650 -
Lele22g0759 1062 MobiDBLite consensus disorder prediction 1011 1062 - -
Lele22g0759 1062 MobiDBLite consensus disorder prediction 53 74 - -
Lele22g0759 1062 Gene3D iswi atpase 896 928 - -
Lele22g0759 1062 Gene3D - 929 1033 - -
Lele22g0759 1062 Gene3D - 191 406 IPR038718 -
Lele22g0759 1062 FunFam ISWI chromatin-remodeling complex ATPase CHR11 742 840 - -
Lele22g0759 1062 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 646 IPR001650 -
Lele22g0759 1062 FunFam ISWI chromatin-remodeling complex ATPase CHR11 411 703 - -
Lele22g0759 1062 ProSiteProfiles SANT domain profile. 840 892 IPR017884 -
Lele22g0759 1062 Gene3D - 411 703 IPR027417 -
Lele22g0759 1062 MobiDBLite consensus disorder prediction 1011 1029 - -
Lele22g0759 1062 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 753 843 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lele22g0759 1062 SUPERFAMILY Homeodomain-like 844 894 IPR009057 -
Lele22g0759 1062 SUPERFAMILY Homeodomain-like 896 1018 IPR009057 -
Lele22g0759 1062 Gene3D ISWI, HAND domain 742 840 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lele22g0759 1062 Pfam Helicase conserved C-terminal domain 493 605 IPR001650 -
Lele22g0759 1062 Gene3D - 841 895 - -
Lele22g0759 1062 Coils Coil 998 1025 - -
Lele22g0759 1062 CDD DEXHc_SMARCA1_SMARCA5 187 407 IPR044754 GO:0005524
Lele22g0759 1062 SMART sant 943 1004 IPR001005 -
Lele22g0759 1062 SMART sant 841 890 IPR001005 -
Lele22g0759 1062 MobiDBLite consensus disorder prediction 1 82 - -
Lele22g0759 1062 MobiDBLite consensus disorder prediction 9 26 - -
Lele22g0759 1062 MobiDBLite consensus disorder prediction 1043 1062 - -
Lele22g0759 1062 FunFam Chromatin-remodeling complex ATPase 191 406 - -
Lele22g0759 1062 MobiDBLite consensus disorder prediction 137 169 - -
Lele22g0759 1062 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 367 IPR014001 -
Lele22g0759 1062 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 93 1048 - -
Lele22g0759 1062 Pfam SNF2-related domain 203 470 IPR000330 GO:0005524|GO:0140658
Lele22g0759 1062 CDD SANT 844 888 IPR001005 -
Lele22g0759 1062 Pfam HAND 754 836 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lele22g0759 1062 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 841 895 - -
Lele22g0759 1062 CDD SF2_C_SNF 491 616 - -
Lele22g0759 1062 FunFam ISWI chromatin-remodeling complex ATPase CHR11 929 1032 - -
Lele22g0759 1062 SMART ultradead3 186 378 IPR014001 -
Lele22g0759 1062 MobiDBLite consensus disorder prediction 140 160 - -
Lele22g0759 1062 Pfam SLIDE 898 1008 IPR015195 GO:0003677|GO:0005634|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0759 Lele-ChrLele22 4970672 4978397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0759 211 632 RAD5 or RAD16-like Gene Family AT1G02670 26.931 3.44e-42 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele22g0759 SNF2_N 1.1e-71 CL0023